View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_high_30 (Length: 301)
Name: NF16732_high_30
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 53046225 - 53045939
Alignment:
| Q |
1 |
cttgtatagcttgcatactctctggtccagagccctggatgcgaaataatgcaacaccatcttccttgtatgtctcgtctggaatttcattctccgcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53046225 |
cttgtatagcttgcatactctctggtccagagccctggatgcgaaataatgcaacaccatcttccttgtatgtctcgtctggaatttcattctccgcaat |
53046126 |
T |
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| Q |
101 |
gtaattcttatatgcatcactaagtccgccctgatggacaattgaaataaatgaccagtattaaataaaaaataattcaagcgataaaatagctttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53046125 |
gtaattcttatatgcatcactaagtccgccctgatggacagttgaaataaatgaccagtattaaataaaaaataattcaagctataaaatagctttttct |
53046026 |
T |
|
| Q |
201 |
agttacaccaatcaaaatccaacaaaccttaaaaacaatcaagctttggaggatggaataaaattgaattgtttcactgccttcata |
287 |
Q |
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| T |
53046025 |
agttacaccaatcaaaatccaacaaaccttaaaaacaatcaagctttggaggatggaataaaattgaattgtttcactgccttcata |
53045939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 15960948 - 15961082
Alignment:
| Q |
1 |
cttgtatagcttgcatactctctggtccagagccctggatgcgaaataatgcaacaccatcttccttgtatgtctcgtctggaatttcattctccgcaat |
100 |
Q |
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||||||||||||||||| | || ||||||| |||||||||||| ||||||||||| | || || ||||||||||| || |||||||| || |||||||| |
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| T |
15960948 |
cttgtatagcttgcatattatcaggtccagtgccctggatgcggaataatgcaacgctgtcctcattgtatgtctcatcaggaatttccttttccgcaat |
15961047 |
T |
|
| Q |
101 |
gtaattcttatatgcatcactaagtccgccctgat |
135 |
Q |
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|||| |||| ||| |||||||||| || ||||||| |
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| T |
15961048 |
gtaagtcttgtatccatcactaagccctccctgat |
15961082 |
T |
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