View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16732_high_34 (Length: 291)
Name: NF16732_high_34
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 21 - 277
Target Start/End: Original strand, 2438632 - 2438888
Alignment:
| Q |
21 |
acagtgacggcagtgactagaaagaatggatagcatgtctgtgtatgcttgatgaaaagaacaaagtttatataatgatattttagtcaacatattagaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2438632 |
acagtgacggcagtgactagaaagaatggatagcatgtctgtgtatgcttgatgaaaagaacaaagtttatataatgatattttagtcaacatattagaa |
2438731 |
T |
|
| Q |
121 |
atatcttaaacccatcttctctcccctccaaatctcccaatgatagaggggaataaaaatggactgaggaagaattttgcctctcttaattccctccctt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2438732 |
atatcttaaacccatcttctctcccctccaaatctcccaatgatagaggggaataaaaatggactgaggaagaattttgcctctcttaattccctccctt |
2438831 |
T |
|
| Q |
221 |
ccatttcctcatggccaaacaatatgttcgtaactatatttgctaggaaagaataat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2438832 |
ccatttcctcatggccaaacaatatgttcgtaactatatttgctaggaaagaataat |
2438888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University