View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16732_high_35 (Length: 283)
Name: NF16732_high_35
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_35 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 8233467 - 8233717
Alignment:
| Q |
18 |
cgaactgtatgaacaaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8233467 |
cgaactgtgtgaacaaagattcataaacacgagcaagctcatttgggtctgaaaccacatcaataccaaagtgtgtttcaaaaaccctcaagctccggag |
8233566 |
T |
|
| Q |
118 |
ctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8233567 |
ctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttca |
8233666 |
T |
|
| Q |
218 |
aggaagtggacaattgtggcaccatccaaaatttctacactcatctttctt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8233667 |
aggaagtggacaattgtggcaccatccaaaatttctacactcatctttctt |
8233717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 8236814 - 8237063
Alignment:
| Q |
18 |
cgaactgtatgaacaaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgag |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
8236814 |
cgaattgtatgaacaaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaatcctcaagctccggag |
8236913 |
T |
|
| Q |
118 |
ctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8236914 |
ctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttca |
8237013 |
T |
|
| Q |
218 |
aggaagtggacaattgtggcaccatccaaaatttctacactcatctttct |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
8237014 |
aggaagtggacaattgtggcaccatccaaaatttccacactcatttttct |
8237063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 8223706 - 8223954
Alignment:
| Q |
18 |
cgaactgtatgaacaaagattcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgag |
117 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8223706 |
cgaactgtatgaacaacgactcataaacacgagcaagctcatttgggtctgaatccacatcaataccaaagtgtgtttcaaaaaccctcaagctcctgag |
8223805 |
T |
|
| Q |
118 |
ctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttcttcatcttca |
217 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| || || ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8223806 |
ctccttcaacatctcatcataggagagcagaccatccttatttgtgtcgagccgagcaaaccgatttcctaccgagctattaaatgcttcttcatcttca |
8223905 |
T |
|
| Q |
218 |
aggaagtggacaattgtggcaccatccaaaatttctacactcatctttc |
266 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8223906 |
aggaaatggacaattgtggcaccatccaaaatttctacactcatctttc |
8223954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 8239872 - 8240030
Alignment:
| Q |
109 |
gctcctgagctccttcaacatctcttcataggagagaagaccgtcgttgtttgtgtcgaggcgagcgaaccgatttcctaccgagctattaaatgcttct |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||| ||| |||||||||| ||||||||||| |||||| |
|
|
| T |
8239872 |
gctcctgagctccttcaacatctcatcataagagagcagaccatccttatttgtgtcgagccgagcaaactgatttcctactgagctattaaacgcttct |
8239971 |
T |
|
| Q |
209 |
tcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttct |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8239972 |
tcatcttcaaggaagtggacaattgtggcaccatccaaaatttctacactcatctttct |
8240030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University