View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_high_36 (Length: 276)
Name: NF16732_high_36
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_36 |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 100 - 258
Target Start/End: Original strand, 15154423 - 15154581
Alignment:
| Q |
100 |
tataaatacagtagtgttcaagttgaacatgattgatatgtggattatagtattatagaagcagctcatcatgaaagagaacatgtcccacattgtacta |
199 |
Q |
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| T |
15154423 |
tataaatacagtagtgttcaagttgaacatgattgatatgtggattatagtattatagaagcaggtcatcatgaaagagaacatgtcccacattgtacta |
15154522 |
T |
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| Q |
200 |
ctattcctttaccatctcttttattaaattatgtagcagtgagtgagtaatgaattaag |
258 |
Q |
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| T |
15154523 |
ctattcctttaccttctcttttattaaattatgtagcagtgagtgagtaatgaattaag |
15154581 |
T |
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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 1746940 - 1746909
Alignment:
| Q |
27 |
ttttaagttttagtattctacactttgtatct |
58 |
Q |
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| T |
1746940 |
ttttaagttttagtattctacactttgtatct |
1746909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 58
Target Start/End: Complemental strand, 42381855 - 42381824
Alignment:
| Q |
27 |
ttttaagttttagtattctacactttgtatct |
58 |
Q |
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| T |
42381855 |
ttttaagttttagtattctacactttgtatct |
42381824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 56
Target Start/End: Complemental strand, 79551 - 79522
Alignment:
| Q |
27 |
ttttaagttttagtattctacactttgtat |
56 |
Q |
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| T |
79551 |
ttttaagttttagtattctacactttgtat |
79522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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