View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_high_4 (Length: 630)

Name: NF16732_high_4
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_high_4
NF16732_high_4
[»] chr4 (1 HSPs)
chr4 (11-612)||(45279893-45280515)


Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Original strand, 45279893 - 45280515
Alignment:
Q  11 agattattctcaaactgcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45279893 agattattctcaaactgcaaatatgttataaaaatagcaagtacctttgagcttgttgatgaaaagtttcgccttgtcttcaacactatttgagagagac 45279992  T
Q  111 tgaaattgaaaatagatatataagtattcttgtacataaatttatgtttgcaacaa--------------------aacaaaggttaa----ttaacagt 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||    ||||||||    
T  45279993 tgaaattgaaaatagatatataagtattcttgtacataaatttatgtttgcaacaaaacaattcgcattaacataaaacaaaggttaattaattaacagt 45280092  T
Q  187 aagagtaaaagttcatactgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45280093 aagagtaaaagttcatactgatcattttggtttatttttcataatgatcattttatatacttccaaggtatataggacataattttgtgactctagtcat 45280192  T
Q  287 attcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagtcatttatccaaaatagacataactcaga 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |    
T  45280193 attcaagattccaagaacataagactctgctacttctattatcaaatcttatattcttagtattttagaagccatttatccaaaatagacataactc--a 45280290  T
Q  387 aacaatnnnnnnntttaagagttaaatatggtcttgaacaaatgaaaaagaaataagagactcacagataagtcgttggttatgtgggaaatctcttcct 486  Q
    ||||||       ||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  45280291 aacaat-aaaaaatttaagatttaaatatggtcttgaacaaatgaaaaagaagtaagaggctcacagataagtcgttggttatgtgggaaatctcttcct 45280389  T
Q  487 tggctttcttggagatccaaaagcttccaagtttagtcatagctttatccattttccttctcaatattttttgcagaaagaaatgaatataaaaatggtg 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45280390 tggctttcttggagatccaaaagcttccaagtttagtcatagctttatccattttccttctcaatattttttgcagaaagaaatgaatataaaaatggtg 45280489  T
Q  587 ttaaaaacactttagaggcttagagt 612  Q
    ||||||||||||||||||||||||||    
T  45280490 ttaaaaacactttagaggcttagagt 45280515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University