View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_high_52 (Length: 224)

Name: NF16732_high_52
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_high_52
NF16732_high_52
[»] chr4 (7 HSPs)
chr4 (1-224)||(5437289-5437512)
chr4 (13-224)||(5629648-5629859)
chr4 (41-198)||(5487260-5487417)
chr4 (41-224)||(5447517-5447700)
chr4 (30-224)||(5508489-5508683)
chr4 (147-224)||(5458587-5458664)
chr4 (7-167)||(5981213-5981373)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5437512 - 5437289
Alignment:
Q  1 caccatcaacagcaacaatgatcaacaaaaacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgat 100  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  5437512 caccatcaacagcaaaaatgatcaacaaaaacaactcccagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccatccaaaatctcgat 5437413  T
Q  101 tcaaatgatgtatggaacaatactgtctgcaaacagatgccgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatg 200  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5437412 tcaaatgatgtatggaacaatactgtctgcaaacaaatgctgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatg 5437313  T
Q  201 acactgagccatcaagtaagtttt 224  Q
    ||||||||||||||||||||||||    
T  5437312 acactgagccatcaagtaagtttt 5437289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 5629648 - 5629859
Alignment:
Q  13 caacaatgatcaacaaaaacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgta 112  Q
    |||||||||||||||| || ||  | ||||||||||||||||||||| || ||||||||||||||||   ||||||||||  |||  | |||| |||||     
T  5629648 caacaatgatcaacaacaagaatcctcagaatcatcaccattccttggaagcatcaaaaacctctacaaaaccgtacaaaccctcactccaaacgatgtt 5629747  T
Q  113 tggaacaatactgtctgcaaacagatgccgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccat 212  Q
    ||||||||  |||||| |||||| ||||  ||| |||||| |||||| |||||| || |||||||||| |||||| ||||| | |||||||||||  |||    
T  5629748 tggaacaaccctgtctacaaacaaatgctattgaatcccaagaatccatgtgaatcactgtgcatgaacctgttcatgaatatcgatgacactgaatcat 5629847  T
Q  213 caagtaagtttt 224  Q
    ||||||||||||    
T  5629848 caagtaagtttt 5629859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 5487260 - 5487417
Alignment:
Q  41 gaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgtatggaacaatactgtctgcaaacagatgc 140  Q
    ||||||||||| |||||||||||||||||| |||||||||  ||||| ||||| ||  | ||| | ||||| |||||||| | ||| |||||||| ||||    
T  5487260 gaatcatcaccgttccttgaaaacatcaaacacctctaccaaaccgtccaaaacctaaactcagacgatgtttggaacaacaatgtatgcaaacaaatgc 5487359  T
Q  141 cgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttga 198  Q
     | ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  5487360 tgctgcatcccaggaatccctgtgaagcattgtgcgcgaagttgttcttgaatgttga 5487417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 5447700 - 5447517
Alignment:
Q  41 gaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgtatggaacaatactgtctgcaaacagatgc 140  Q
    |||||||||||||||||||| ||||||||| || ||||||  || || ||| |  |   |||||||||||| ||||||||  || | || || || |||     
T  5447700 gaatcatcaccattccttgacaacatcaaatacatctaccaaactgtccaagacataacttcaaatgatgtttggaacaaccctttatgtaagcaaatgt 5447601  T
Q  141 cgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccatcaagtaagtttt 224  Q
     | ||||||| |||||||| |||||| ||  |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||    
T  5447600 tgctgcatccgaggaatccatgtgaatcacagtgcatgaagttgttcttgaatattgatgacactgaaccatcaagtaagtttt 5447517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 5508489 - 5508683
Alignment:
Q  30 aacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgtatggaacaatactgtctg 129  Q
    |||||||| || |||||||||||||| ||||||||||||||||||| ||||  ||||| ||||| ||| | ||  | || || ||||||||  |  | ||    
T  5508489 aacaactctcaaaatcatcaccattctttgaaaacatcaaaaacctttaccaaaccgtccaaaacctcaactcggacgaggtttggaacaaccccttatg 5508588  T
Q  130 caaacagatgccgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccatcaagtaagtttt 224  Q
     || || |||  | ||||||| |||||| | |||||| || ||||||||||| ||| ||||||| |||||||  |||| ||||||||||||||||    
T  5508589 taagcaaatgttgctgcatccgaggaattcatgtgaatcactgtgcatgaagttgtacttgaatattgatgattctgaaccatcaagtaagtttt 5508683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 5458664 - 5458587
Alignment:
Q  147 atcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccatcaagtaagtttt 224  Q
    ||||||||||||| |||||| |  | |||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  5458664 atcccaggaatccatgtgaatctctttgcatgaacctgttcttgaatgttgataacagtgagccatcaagtaagtttt 5458587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 5981373 - 5981213
Alignment:
Q  7 caacagcaacaatgatcaacaaaaacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaat 106  Q
    ||||| |||||||||||||||| || ||  | |||||||||||||||||| || ||||||||||||||||||    |  |||||||  |||| | |||||    
T  5981373 caacaacaacaatgatcaacaacaagaatcctcagaatcatcaccattccctggaaacatcaaaaacctctatgaaagtgtacaaaccctcgctccaaat 5981274  T
Q  107 gatgtatggaacaatactgtctgcaaacagatgccgttgcatcccaggaatccctgtgaag 167  Q
    ||||| ||||||||  |||| |||||||| |||  |||| |||| | |||||| |||||||    
T  5981273 gatgtttggaacaaccctgtatgcaaacaaatgttgttgaatccaaagaatccatgtgaag 5981213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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