View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_high_6 (Length: 591)
Name: NF16732_high_6
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 575
Target Start/End: Complemental strand, 50226147 - 50225589
Alignment:
| Q |
17 |
atgaatcagtttctatgtctccccataaatttttatctaattgcctctgaattgtgggacttcaccaaattatcaaaaatgttatgtgcaagagccaagg |
116 |
Q |
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| T |
50226147 |
atgaatcagtttctttgtctccccataaaattttatctaattgcctctgaattgtgggacttcaccaaattatcaaaaatgttatgtgcaagagccaagg |
50226048 |
T |
|
| Q |
117 |
tgaggctaaagatcataatcatatgatgttaatttccaaaagaaacagttgaattagcgaaaagatacatcaatttatccaaggcttctggataaaactt |
216 |
Q |
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| T |
50226047 |
tgaggctaaagatcataatcatatgatgttaatttccaaaagaaacagttgaattagcgaaaagatacatcaatttatccaaggcttctggataaaactt |
50225948 |
T |
|
| Q |
217 |
cctggcaaataaataacaaggtctttttgacccattccacatgcaaggagtgatcaacactgttctctgcaaagcatatgaaatttaaaataaacaataa |
316 |
Q |
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| T |
50225947 |
cctggcaaataaataacaaggtctttttgacccattccacatgcaaggagtgatcaacactgttctctgcaaagcatatgaaatttaaaataaacaataa |
50225848 |
T |
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| Q |
317 |
ttcatttctttgataaaaagaaaactataattagtatcacaatattgaagtccttattctatcatttatacctttgaatcacttgtaatatgtggacttt |
416 |
Q |
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| T |
50225847 |
ttcatttctttgataaaaagaaaactataattagtatcacaatattgaagtccttattctatcatttatacctttgaatcacttgtaatatgtggacttt |
50225748 |
T |
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| Q |
417 |
gattaagggactgcattgaataaaactatgtcattaaaattatagaaaaaatgctgcctaaaaaccaagtagtgtaataaggataaaaatagggaacaaa |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50225747 |
gattaagggactgcattgaataaaactatgtcattaaaattatagaaaaaatgctgcctaaaaaccaagtagtataataaggataaaaatagggaacaaa |
50225648 |
T |
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| Q |
517 |
gtgatattcttaaaaaaggactaaccctagtcaagtaaatttcctgttttcattttgtt |
575 |
Q |
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| T |
50225647 |
gtgatattcttaaaaaaggactaaccctagtcaagtaaatttcctgttttcattttgtt |
50225589 |
T |
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