View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_1 (Length: 1001)

Name: NF16732_low_1
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_1
NF16732_low_1
[»] chr7 (19 HSPs)
chr7 (144-691)||(28585542-28586089)
chr7 (144-568)||(28403707-28404131)
chr7 (749-985)||(28585248-28585484)
chr7 (766-985)||(28404332-28404551)
chr7 (852-985)||(28417853-28417986)
chr7 (280-568)||(28417400-28417679)
chr7 (829-984)||(28580249-28580405)
chr7 (15-147)||(28403544-28403685)
chr7 (15-147)||(28586111-28586252)
chr7 (857-982)||(28420253-28420378)
chr7 (486-583)||(28580575-28580672)
chr7 (857-982)||(28581812-28581937)
chr7 (837-948)||(27834771-27834870)
chr7 (280-373)||(28419851-28419944)
chr7 (280-373)||(28582246-28582339)
chr7 (508-583)||(28420067-28420142)
chr7 (508-583)||(28582048-28582123)
chr7 (175-219)||(8047370-8047415)
chr7 (175-265)||(28417270-28417363)
[»] chr8 (2 HSPs)
chr8 (855-888)||(12983585-12983618)
chr8 (502-571)||(12984760-12984829)


Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 144 - 691
Target Start/End: Complemental strand, 28586089 - 28585542
Alignment:
144 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28586089 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc 28585990  T
244 agactcaaaaagtgaaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt 343  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28585989 agactcaaaaagtgcaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt 28585890  T
344 tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacaca 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
28585889 tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacaca 28585790  T
444 ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
28585789 ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagataggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggt 28585690  T
544 cattgctcccttatcagcacatactctttctaaggtaatcgatccgaacagttcttactttctactgtcatatgatgaacaatgttgccaagtttacatt 643  Q
    |||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
28585689 catttctcccttatcagcacatactctttctaaggtaatcaatcccaacagctcttactttctactgtcatatgatgaacaatgttgccaagtttacatt 28585590  T
644 tcataattattttaaactacattgaggttttgattagttgtgctcctg 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
28585589 tcataattattttaaactacattgaggttttgattagttgtgctcctg 28585542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 144 - 568
Target Start/End: Original strand, 28403707 - 28404131
Alignment:
144 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28403707 catgatgctacaggcataaggtcttttgagcgagctacgtatgatataagaactaggattaaagacattgttaaaatatcttggtgatgatggctaactc 28403806  T
244 agactcaaaaagtgaaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt 343  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28403807 agactcaaaaagtgcaattggacatgttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtt 28403906  T
344 tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacaca 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
28403907 tttaatgctttttcagaatgggcagaagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacaca 28404006  T
444 ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
28404007 ggcatgacatatataaagacgattctgagtggaaaaattggaaaaagataggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggt 28404106  T
544 cattgctcccttatcagcacatact 568  Q
    |||||||||||||||||||||||||    
28404107 cattgctcccttatcagcacatact 28404131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 749 - 985
Target Start/End: Complemental strand, 28585484 - 28585248
Alignment:
749 atagtagtttatatttcatgtatacattacaagtcgatttgacatagacgaaacaagtttgtccttgtgatttttacatccttaactgttttgaggaatg 848  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
28585484 atagtagtatatatttcatgtatacattacaagtcgatttgacatagacaaaacaagtttgcccttgtgatttttacatccttaactgttttgaggaatg 28585385  T
849 gtgttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaat 948  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28585384 gtgttgtgttgtagatttctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaat 28585285  T
949 ggatggttgtatgtggagaaaccctttcacagaacag 985  Q
    |||||||||||||||||||||||||||||||||||||    
28585284 ggatggttgtatgtggagaaaccctttcacagaacag 28585248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 766 - 985
Target Start/End: Original strand, 28404332 - 28404551
Alignment:
766 atgtatacattacaagtcgatttgacatagacgaaacaagtttgtccttgtgatttttacatccttaactgttttgaggaatggtgttgtgttgtagatt 865  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28404332 atgtatacattacaagtcgatttgacatagacgaaacaagtttgtccttgtgatttttacatccttaactgttttgaggaatggtgttgtgttgtagatt 28404431  T
866 gctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtgga 965  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
28404432 gctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtgga 28404531  T
966 gaaaccctttcacagaacag 985  Q
    ||||||||||||||||||||    
28404532 gaaaccctttcacagaacag 28404551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 852 - 985
Target Start/End: Original strand, 28417853 - 28417986
Alignment:
852 ttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatgga 951  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
28417853 ttgtgttgtagattgctggagggttgtgtgacaatctattgacaagcattgtgagagcatgggactacgagaagccgatgttcgttgcaccatcaatgga 28417952  T
952 tggttgtatgtggagaaaccctttcacagaacag 985  Q
    ||||||||||||||||||||||||||||||||||    
28417953 tggttgtatgtggagaaaccctttcacagaacag 28417986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 280 - 568
Target Start/End: Original strand, 28417400 - 28417679
Alignment:
280 gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaagagca 379  Q
    |||||||||||| ||| ||||||||  |||||||||||||||||| |||||||||||||||||| ||  |||||| ||||||||||||||||||| |||     
28417400 gaggaagcctcggattgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagct 28417499  T
380 gttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacacaggcatgacatatataaagacgattctgagtggaaaa 479  Q
    ||||| ||| ||||| |||| |||||||||| | ||||||||||||||||  |||||          | |  ||||     ||||||  ||| |||||||    
28417500 gttgtcacaaaaacagctttacaatttcttgctaatgagaaagcagaatcaatgttc---------gaagtaatattctgcgacgatcatgactggaaaa 28417590  T
480 attggaaaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatact 568  Q
    || |||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||    
28417591 ataggaaaaagataggtgattctgtgcttcacattgagcttgctaagtgggctgatatcatcgtcattgctcccttatcagcacatact 28417679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 829 - 984
Target Start/End: Complemental strand, 28580405 - 28580249
Alignment:
829 cttaactgttttgaggaatggtgtt-gtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagcc 927  Q
    ||||||| |||||||  |||||||| ||||||||||||||||| |||||  |||||||||||||||| |  |||||| ||||||||||||||||||||||    
28580405 cttaactattttgagacatggtgtttgtgttgtagattgctggggggtttagtgacaatctgttgacgactattgtgcgagcatgggactacgagaagcc 28580306  T
928 gatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaaca 984  Q
    ||||||||||||||| |||||| ||| |   ||||||||||| ||||||||||||||    
28580305 gatgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcacagaaca 28580249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 28403544 - 28403685
Alignment:
15 atagtttattccattttattctcagaacaattattta--------tactcaataagataattacagttttttatctgaaccagt-gtgtatattaaagaa 105  Q
    ||||| |||||||||||||||||||||||||||||||        || |||||| |||||||||||||||| |||||||||| | |||||||||||||||    
28403544 atagtctattccattttattctcagaacaattatttaatattcaataatcaatatgataattacagtttttgatctgaaccatttgtgtatattaaagaa 28403643  T
106 cttgtgacagttgattttgacatatgttgcattgtattcatg 147  Q
    |||||||  |||| ||||| ||||||||| |||| |||||||    
28403644 cttgtgatggttggttttgtcatatgttgtattgcattcatg 28403685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 28586252 - 28586111
Alignment:
15 atagtttattccattttattctcagaacaattattta--------tactcaataagataattacagttttttatctgaaccagt-gtgtatattaaagaa 105  Q
    ||||| |||||||||||||||||||||||||||||||        || |||||| || ||||||||||||| |||||||||| | |||||||||||||||    
28586252 atagtctattccattttattctcagaacaattatttaatattcaataatcaatatgacaattacagtttttgatctgaaccatttgtgtatattaaagaa 28586153  T
106 cttgtgacagttgattttgacatatgttgcattgtattcatg 147  Q
    |||||||  |||| ||||| ||||||||| |||| |||||||    
28586152 cttgtgatggttggttttgtcatatgttgtattgcattcatg 28586111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 857 - 982
Target Start/End: Original strand, 28420253 - 28420378
Alignment:
857 ttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatggatggtt 956  Q
    |||||||||| ||||||||||||||| |||||| | ||||| ||||||||| ||||| ||||  ||||||| |||||||| |||||||||||| ||| |     
28420253 ttgtagattggtggagggttgtgtgataatctgctaacaagtattgtgagatcatggaactataagaagccaatgtttgtagcaccatcaatgaatgatg 28420352  T
957 gtatgtggagaaaccctttcacagaa 982  Q
      ||||||||||| ||||| ||||||    
28420353 caatgtggagaaatcctttgacagaa 28420378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 486 - 583
Target Start/End: Complemental strand, 28580672 - 28580575
Alignment:
486 aaaagattggtgattctgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctttctaaggtaatc 583  Q
    ||||||| |||||||||||||||| |||||| ||||| | ||||||||||||||||| ||||||||||||||||||| ||| | || | |||||||||    
28580672 aaaagataggtgattctgtgcttcccattgagcttgcaagttgggctgacatcatggacattgctcccttatcagcagatattgttgccaaggtaatc 28580575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 857 - 982
Target Start/End: Complemental strand, 28581937 - 28581812
Alignment:
857 ttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgttgcaccatcaatggatggtt 956  Q
    |||||||||| ||||||||||||||| |||||| | ||||| ||||||||| ||||| ||||  ||||||| |||||||| |||||||||||| ||| |     
28581937 ttgtagattggtggagggttgtgtgataatctgctaacaagtattgtgagatcatggaactataagaagccaatgtttgtagcaccatcaatgaatgatg 28581838  T
957 gtatgtggagaaaccctttcacagaa 982  Q
      ||||||||||| ||||| ||||||    
28581837 caatgtggagaaatcctttgacagaa 28581812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 837 - 948
Target Start/End: Complemental strand, 27834870 - 27834771
Alignment:
837 ttttgaggaatggtgttgtgttgtagattgctggagggttgtgtgacaatctgttgacaagcattgtgagagcatgggactacgagaagccgatgtttgt 936  Q
    |||||||  ||| ||||||| |||||||||||| |||||||||||||||||| |||||            |||| ||||||||||||||||| |||||||    
27834870 ttttgagagatgatgttgtgctgtagattgctgcagggttgtgtgacaatcttttgac------------agcaagggactacgagaagccggtgtttgt 27834783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 28419851 - 28419944
Alignment:
280 gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta 373  Q
    |||||||||||| ||| |  |||||  ||||||||||||||||||||||||||| ||||| ||| ||  |||||||   |||||||||||||||    
28419851 gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta 28419944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 28582339 - 28582246
Alignment:
280 gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta 373  Q
    |||||||||||| ||| |  |||||  ||||||||||||||||||||||||||| ||||| ||| ||  |||||||   |||||||||||||||    
28582339 gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta 28582246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 508 - 583
Target Start/End: Original strand, 28420067 - 28420142
Alignment:
508 tcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctttctaaggtaatc 583  Q
    ||||||| | ||||| ||||||||||| ||| || |||||||||||||||| || ||||||||| | |||||||||    
28420067 tcacattaagcttgcgaattgggctgatatcttgctcattgctcccttatctgctcatactcttgccaaggtaatc 28420142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 508 - 583
Target Start/End: Complemental strand, 28582123 - 28582048
Alignment:
508 tcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctttctaaggtaatc 583  Q
    ||||||| | ||||| ||||||||||| ||| || |||||||||||||||| || ||||||||| | |||||||||    
28582123 tcacattaagcttgcgaattgggctgatatcttgctcattgctcccttatctgctcatactcttgccaaggtaatc 28582048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 8047415 - 8047370
Alignment:
175 gagctacgtatgatataagaactaggattaaagacat-tgttaaaa 219  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||    
8047415 gagctacatatgatataagaactaggattaaagacatatgttaaaa 8047370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 28417270 - 28417363
Alignment:
175 gagctacgtatgatataagaactaggattaaagacattgttaaaa---tatcttggtgatgatggctaactcagactcaaaaagtgaaattgga 265  Q
    ||||| ||| |||||||||||  | |||| ||| |||||||||||   ||| |||| ||||||||||||||||||||| | ||||| |||||||    
28417270 gagctgcgtgtgatataagaatcaagattgaaggcattgttaaaaaaatatattggcgatgatggctaactcagactctacaagtgcaattgga 28417363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 855 - 888
Target Start/End: Complemental strand, 12983618 - 12983585
Alignment:
855 tgttgtagattgctggagggttgtgtgacaatct 888  Q
    ||||||||||||||||||| ||||||||||||||    
12983618 tgttgtagattgctggaggattgtgtgacaatct 12983585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 502 - 571
Target Start/End: Complemental strand, 12984829 - 12984760
Alignment:
502 tgtgcttcacattgaacttgctaattgggctgacatcatggtcattgctcccttatcagcacatactctt 571  Q
    ||||||||||||||| |||   || |||||||| ||||||||||||||||| || |||||| | ||||||    
12984829 tgtgcttcacattgagcttcgcaaatgggctgatatcatggtcattgctccattgtcagcaaacactctt 12984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University