View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_10 (Length: 541)

Name: NF16732_low_10
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_10
NF16732_low_10
[»] chr3 (10 HSPs)
chr3 (1-522)||(33618387-33618908)
chr3 (275-522)||(33609212-33609459)
chr3 (386-522)||(33588496-33588632)
chr3 (386-522)||(33595668-33595804)
chr3 (386-522)||(33602799-33602935)
chr3 (273-522)||(33627602-33627851)
chr3 (3-76)||(33609551-33609624)
chr3 (1-72)||(33628040-33628111)
chr3 (279-345)||(33622758-33622824)
chr3 (1-61)||(33623664-33623724)
[»] chr1 (2 HSPs)
chr1 (147-205)||(19908043-19908102)
chr1 (151-196)||(43240391-43240437)
[»] chr7 (1 HSPs)
chr7 (150-196)||(38900181-38900227)
[»] chr4 (1 HSPs)
chr4 (150-195)||(51811290-51811335)


Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 33618908 - 33618387
Alignment:
Q  1 tgcccttggatatgtcctttgtaccatcaacaccagtcaccactgccaggacaatggacacagcaatcttcacatttttgagacaaagtattttaattag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33618908 tgcccttggatatgtcctttgtaccatcaacaccagtcaccactgccaggacaatggacacagcaatcttcacattgttgagacaaagtattttaattag 33618809  T
Q  101 taacaagtggaactaaataaaaaatgttaaatagcttaaaagcaataatcaagccttatcccactaagtgagtcggctgcatgaataaaatgacgcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33618808 taacaagtggaactaaataaaaaatgttaaatagcttaaaagcaataatcaagccttatcccactaagtgagttggctgcatgaataaaatgacgcaatg 33618709  T
Q  201 atgttaaacaacttaaaaatatatttcatagggacacaaaatatattagctaacaaaaggatagataggtttagttcgcttaccaagcagacaagcatca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33618708 atgttaaacaacttaaaaatatatttcatagggacacaaaatatattaactaacaaaaagatagataggtttagttcgcttaccaagcagacaagcatca 33618609  T
Q  301 taattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618608 taattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatccaagtataatggc 33618509  T
Q  401 ggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgttggaaaaacggg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33618508 ggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagctgttggaaaaacggg 33618409  T
Q  501 attgcaaatgccatcaccaagt 522  Q
    ||||||||||||||||||||||    
T  33618408 attgcaaatgccatcaccaagt 33618387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 275 - 522
Target Start/End: Complemental strand, 33609459 - 33609212
Alignment:
Q  275 ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa 374  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||||| |||||||| |    
T  33609459 ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacaca 33609360  T
Q  375 aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttga 474  Q
    |||||||| |||||||||| ||||||||||| |||||| |||||  |||| || |||||||| || |||||||| |||||||| || || || |||||||    
T  33609359 aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttga 33609260  T
Q  475 tccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagt 522  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  33609259 tcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagt 33609212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 33588632 - 33588496
Alignment:
Q  386 tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc 485  Q
    |||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| |    
T  33588632 tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac 33588533  T
Q  486 tgttggaaaaacgggattgcaaatgccatcaccaagt 522  Q
    ||||| ||||| ||||||| ||||||||| |||||||    
T  33588532 tgttgaaaaaatgggattgaaaatgccatgaccaagt 33588496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 33595804 - 33595668
Alignment:
Q  386 tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc 485  Q
    |||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| |    
T  33595804 tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac 33595705  T
Q  486 tgttggaaaaacgggattgcaaatgccatcaccaagt 522  Q
    ||||| ||||| ||||||| ||||||||| |||||||    
T  33595704 tgttgaaaaaatgggattgaaaatgccatgaccaagt 33595668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 33602935 - 33602799
Alignment:
Q  386 tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc 485  Q
    |||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| |    
T  33602935 tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac 33602836  T
Q  486 tgttggaaaaacgggattgcaaatgccatcaccaagt 522  Q
    ||||| ||||| ||||||| ||||||||| |||||||    
T  33602835 tgttgaaaaaatgggattgaaaatgccatgaccaagt 33602799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 273 - 522
Target Start/End: Complemental strand, 33627851 - 33627602
Alignment:
Q  273 agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca 372  Q
    ||||| |||||||||||||||| ||| ||||| |||||||  |||||||||||||||||||||| |||||||| || |  || |||||  ||| ||||      
T  33627851 agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaataacagtagaagagacgaggatagatg 33627752  T
Q  373 aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgtt 472  Q
     |||| |||||   ||||||||||| || ||||||||||   | | |||||| || |||| |||   ||||||||| |||||||| || || | ||||||    
T  33627751 caaggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgtt 33627652  T
Q  473 gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagt 522  Q
    |||||||||||  ||||| |||||||||||||| |  ||||| |||||||    
T  33627651 gatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagt 33627602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 33609624 - 33609551
Alignment:
Q  3 cccttggatatgtcctttgtaccatcaacaccagtcaccactgccaggacaatggacacagcaatcttcacatt 76  Q
    |||||||||||||| |||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  33609624 cccttggatatgtcgtttgtaccgtcaacaccagacaccactgctagcacaatggacacagcaatcttcacatt 33609551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33628111 - 33628040
Alignment:
Q  1 tgcccttggatatgtcctttgtaccatcaacaccagtcaccactgccaggacaatggacacagcaatcttca 72  Q
    ||||||| |||||||| |||||||||||||||||||| |||||||| || ||||||||||| |||| |||||    
T  33628111 tgccctttgatatgtcatttgtaccatcaacaccagttaccactgctagcacaatggacaccgcaagcttca 33628040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 345
Target Start/End: Complemental strand, 33622824 - 33622758
Alignment:
Q  279 cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa 345  Q
    ||||| |||||||||| ||||||||  ||||| | ||||||||||||||||||||||| || |||||    
T  33622824 cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaa 33622758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33623724 - 33623664
Alignment:
Q  1 tgcccttggatatgtcctttgtaccatcaacaccagtcaccactgccaggacaatggacac 61  Q
    ||||||| |||||||| |||||||||||||||||||  ||||||| ||| |||||| ||||    
T  33623724 tgccctttgatatgtcatttgtaccatcaacaccaggaaccactgtcagcacaatgaacac 33623664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 19908043 - 19908102
Alignment:
Q  147 aatcaagccttatcccactaagt-gagtcggctgcatgaataaaatgacgcaatgatgtt 205  Q
    ||||||||||||||||||||||| | ||||||| |||| ||||||| ||||||| |||||    
T  19908043 aatcaagccttatcccactaagtggggtcggctacatggataaaattacgcaataatgtt 19908102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 43240391 - 43240437
Alignment:
Q  151 aagccttatcccactaagtga-gtcggctgcatgaataaaatgacgc 196  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||||||    
T  43240391 aagccttatcccactaagtgaggtcggctacatgaatcaaatgacgc 43240437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 38900227 - 38900181
Alignment:
Q  150 caagccttatcccactaagtgagtcggctgcatgaataaaatgacgc 196  Q
    ||||||||||||||||||||| ||||||| |||| || |||||||||    
T  38900227 caagccttatcccactaagtgggtcggctacatggatcaaatgacgc 38900181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 51811290 - 51811335
Alignment:
Q  150 caagccttatcccactaagtgagtcggctgcatgaataaaatgacg 195  Q
    ||||||||||||||||||||| ||||||| |||| || ||||||||    
T  51811290 caagccttatcccactaagtgggtcggctacatggatcaaatgacg 51811335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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