View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_11 (Length: 507)
Name: NF16732_low_11
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 49614639 - 49615133
Alignment:
| Q |
1 |
agacctttcccgcaacagaaacatctagtgatgaggttaaggaaaacttgatttacaagaaggaaggagaaggcaacaaatccgtagaaggtggaagcat |
100 |
Q |
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| T |
49614639 |
agacctttcccgcaacagaaacatctagtgatgaggttaaggaaaacttgatttacaagaaggaaggagaaggcaacaaatccgtagaaggtggaagcat |
49614738 |
T |
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| Q |
101 |
cggtggtgtatacgcagatagttccgtcgtcgttgggaagctcttcagcctgaaaaggtaaagggattaaaagagaattgagaaaca----aactaaaaa |
196 |
Q |
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| T |
49614739 |
cggtggtgtatacgcagatagttccgtcgtcgttgggaagctcttcagcctgaaaaggtaaagggatt-aaagagatttgagaaacaaaacaaaaaaaaa |
49614837 |
T |
|
| Q |
197 |
agtagtggtgtgaattaat--gagataatggttacccagtaacgattttcttcggcacgaaaagcatagaaaaaagcaaagagatgcgcaaagatgacga |
294 |
Q |
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| T |
49614838 |
agtagtggtgtgaattaatgagagataatggttacccagtaacgatttacttcggcgcgaaaagcatagaaaaaagcaaagagatgcgcaaagatgacga |
49614937 |
T |
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| Q |
295 |
tgagtaaaactgatatagaaaaagccatgatttatcttgtgtaaagaagactcgttgcagactaggtatatatataaagaggttacaattttattctttt |
394 |
Q |
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| T |
49614938 |
tgattaaaactgatatagaaaaagccatgatttatc-tgtgtaaagaagactcattgcagactaggtatatatataaagaggttacaattttattctttt |
49615036 |
T |
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| Q |
395 |
atttcaaggcttgaattacgcttacttaccaaaatcatttaccaagatttcgcatttcttcgcaggatgataccaaaggaagcgggattctcataat |
491 |
Q |
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| T |
49615037 |
atttcaaggcttgaattacgcttacttaccaaaatcatttaccaagatttcgcatttcttcgcaggatgataccaaaggaaacgggattctcataat |
49615133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 49609559 - 49609899
Alignment:
| Q |
1 |
agacctttcccgcaacagaaacatctagtgatgaggttaaggaaaacttgatttacaagaaggaaggagaaggcaacaaatccgtagaaggtggaagcat |
100 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| |||| ||||||| ||||||| ||| |
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| T |
49609559 |
agacctttaccgcagcagaaacatctagtgatgaggttaaggaaaacttgatttataagaaggcagaagaaggcaccaaagccgtagatggtggaatcat |
49609658 |
T |
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| Q |
101 |
cggtggtgtatacgcagatagttccgtcgtcgttgggaagctcttcagcctgaaaag-gtaaagggattaaaagagaattgagaaacaaactaaaa-aag |
198 |
Q |
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| T |
49609659 |
cagtgtcgtaaacacagatagtttcgtcgacattgggaatctctaaggcctgaaaagcgtaaaggga-tgaaagatattaaagaaacaaaagaaaacaag |
49609757 |
T |
|
| Q |
199 |
----------tagtggtgtgaattaatgagataatggttacccagtaacgattttcttcggcacgaaaagcatagaaaaaagcaaagagatgcgcaaaga |
288 |
Q |
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| T |
49609758 |
agtagtggactcgtggtatgaataaatgagacaggggttacccagatacgattttcttcgccacgaaaagcacaaaagaaagcaaggagatgcacaaaaa |
49609857 |
T |
|
| Q |
289 |
tgacgatgagtaaaactgatatagaaaaagccatgatttatc |
330 |
Q |
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| T |
49609858 |
tgttggcaagtgaaaatgatatagaaaaagccatgatttatc |
49609899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 377 - 475
Target Start/End: Original strand, 49609956 - 49610054
Alignment:
| Q |
377 |
ttacaattttattcttttatttcaaggcttgaattacgcttacttaccaaaatcatttaccaagatttcgcatttcttcgcaggatgataccaaaggaa |
475 |
Q |
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| T |
49609956 |
ttaccattttattccttttcttcaatgcttgaattacgctaacttcccaaaatcatttacgaagatttcaaatttcttggtaggatcataccaaaggaa |
49610054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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