View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16732_low_13 (Length: 481)
Name: NF16732_low_13
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_13 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 6325994 - 6325526
Alignment:
| Q |
1 |
gggaaagtcacaagctgatatcatcccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatttt |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||| || |
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|
| T |
6325994 |
gggaaagtctcaagctgatatcaaaacaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtaacaatgatacatatt |
6325895 |
T |
|
| Q |
101 |
cacatcaatagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatgga |
200 |
Q |
| |
|
|||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6325894 |
cacatcaagagattcattccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatgga |
6325795 |
T |
|
| Q |
201 |
tttatttgggtttttggatctttatctttgctttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaagaaagtttttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325794 |
tttatttgggtttttggatctttatctttgctttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaagaaagtttttga |
6325695 |
T |
|
| Q |
301 |
gggtaaaattgagagtggtatttccgagttacctgcagttaggtcgcttcctatctagagaaattaattttagtgtgttgtattttcattttgttgtatg |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
6325694 |
gggtaaaactgagagtggtatttccgagttacctgtagttaggtcgcttcctatataaagaaattaatttcagtgtgttgtattttcattttgttgtatg |
6325595 |
T |
|
| Q |
401 |
agtttctattttttgtcatgctgttgtactatatgatgtaaaatgttcatttgagatttgtaatatcctat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
6325594 |
agtttctattttttgtcatgctgttgtac--tatgatgtaaaatgttcatttgaaatttgtaatatcctat |
6325526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 6333471 - 6333011
Alignment:
| Q |
1 |
gggaaagtcacaagctgatatcatcccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatttt |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6333471 |
gggaaagtctcaagctgatatcaacccaattatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcatttt |
6333372 |
T |
|
| Q |
101 |
cacatcaatagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatgga |
200 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||| || |||||||| |||| |
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|
| T |
6333371 |
cacatcaagagtttctttccttccaagatgatcattcttttacttggaagtgttgtttcagttttagctttgatgataatttctcctacaattgcttgga |
6333272 |
T |
|
| Q |
201 |
tttatttgggtttttggatctttatctttgctttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaagaaagtttttga |
300 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
6333271 |
tttatttgggtttgttgatcttcatctttgctttgatgtgctataagagtaaaaatgaaatctatcaattgattccagaaaggatcaagaaagtgtttga |
6333172 |
T |
|
| Q |
301 |
gggtaaaattgagagtggtatttccgagttacctgcagttaggtcgcttcctatctagagaaattaattttagtgtgttgtattttcattttgttgtatg |
400 |
Q |
| |
|
|||| | | | ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6333171 |
gggtcagactcagagtggcgattcggagttacctgcagttaggtcgattcctatctagagaaattaa----------------tttcattttgttgtatg |
6333088 |
T |
|
| Q |
401 |
agtttctattttttgtcatgctgttgtact---atatg--atgtaaaatgttcatttgagatttgtaatatcctatg |
472 |
Q |
| |
|
|| ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
6333087 |
agattctattttttatcatgttgttgtactgtactatgatatgtaaaatgttcatttgagatttgtaatatcctatg |
6333011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 33 - 304
Target Start/End: Complemental strand, 6346556 - 6346285
Alignment:
| Q |
33 |
tgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaatagtttccttccttccaagatgat |
132 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| ||| |||||||||||||||| || | || |||||||||| | |||||||| | || |||| | |
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|
| T |
6346556 |
tgatggctttggttttcatggttgctctttactacttggttttggtgcttgtgacaatgctacagcttcacatcaagaacttccttccattcatgatggt |
6346457 |
T |
|
| Q |
133 |
cattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggatttatttgggtttttggatctttatctttgct |
232 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||| ||| | ||||| || |||||||| ||||||| |||||| || |||||||| |||||||| |
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|
| T |
6346456 |
tattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgggcttgtggatcttactctttgct |
6346357 |
T |
|
| Q |
233 |
ttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaagaaagtttttgagggt |
304 |
Q |
| |
|
|||||||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
6346356 |
ttgatgtgctatgagaataaaaaagaactctatcaaatgattccacaaaggatcaagaatgtttttgagggt |
6346285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 32 - 291
Target Start/End: Original strand, 6242717 - 6242966
Alignment:
| Q |
32 |
atgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaatagtttccttccttccaagatga |
131 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||| | || |||| |
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|
| T |
6242717 |
atgatggctttggttttcgctatttttctttactacctagctttggtgcttgtgacaatgttacagcttcacatcaatagtttccttccatacatgatgg |
6242816 |
T |
|
| Q |
132 |
tcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggatttatttgggtttttggatctttatctttgc |
231 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||| |
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|
| T |
6242817 |
taattcttttacttggaagtgttatttcaattttagc----------atttcgccgacaattgcttggatttatttgggtttgtggatcttaatctttgc |
6242906 |
T |
|
| Q |
232 |
tttgatgtgctataagagtaaaaatgaactctatcaatggattccagaaaggatcaagaa |
291 |
Q |
| |
|
|||||||| |||||||| | ||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
6242907 |
tttgatgttctataagaatcgaaaagaactctttcaatggattccaaaaaggatcaagaa |
6242966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 29 - 304
Target Start/End: Original strand, 6219550 - 6219828
Alignment:
| Q |
29 |
attatgatggctttagttttcatggtttctctttactacctggctttggtgcttgtgacattgttgcattttcacatcaatagtttccttccttccaaga |
128 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||| || | ||| |||||||||| | ||| |||| || |||||||||| || |||||||| | || || |
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|
| T |
6219550 |
attatgatgacattagttttcatggttgctcttttcttcatggttttggtgcttattacaatgttacagattcacatcaagagcttccttccattcatga |
6219649 |
T |
|
| Q |
129 |
tgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggatttatttgggtttttggatctttatctt |
228 |
Q |
| |
|
|| | ||| ||||||||||||||||||||||| || ||||||| ||| | ||||| || |||||||| ||||||| |||| | || |||||||| |||| |
|
|
| T |
6219650 |
tggttattgttttacttggaagtgttgtttcagttctagctttgatgatgatttctcctacaattgcttggatttttttgtgcttgtggatcttactctt |
6219749 |
T |
|
| Q |
229 |
tgctttgatgtgctataagagtaaaaatgaactctatca---atggattccagaaaggatcaagaaagtttttgagggt |
304 |
Q |
| |
|
| |||||||||||||| ||| | ||| || |||||||| || |||||||||||||||||||||||||||||||||| |
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|
| T |
6219750 |
ttctttgatgtgctatgagaatcgaaaagagctctatcaaatattgattccagaaaggatcaagaaagtttttgagggt |
6219828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 471
Target Start/End: Original strand, 6219929 - 6220007
Alignment:
| Q |
389 |
ttttgttgtatgagtttctatttttt-gtcatgctgttgtactatatgatgtaaaatgttcatttgagatttgtaatatcctat |
471 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| | |||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6219929 |
ttttgttgaatgagtttctatttttttgtcaagttgtt-----atatgatgtaaaatgttcatttgaaatttgtaatatcctat |
6220007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 291
Target Start/End: Original strand, 6219151 - 6219298
Alignment:
| Q |
144 |
ttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatggatttatttgggtttttggatctttatctttgctttgatgtgcta |
243 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||| || || ||||| |||||| |||| || | | |||||| || ||| |||||||| |||| |
|
|
| T |
6219151 |
ttggaagtgttgtttttattttagctttgatgaatatttcccctaccattgcttggattgatttcgggctgttgatcttaatattttctttgatgggcta |
6219250 |
T |
|
| Q |
244 |
taagagtaaaaatgaactctatcaatggattccagaaaggatcaagaa |
291 |
Q |
| |
|
||| | | ||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
6219251 |
taaaaatcgaaaagaactctatcaaatgattccccaaaggatcaagaa |
6219298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 992 - 1106
Alignment:
| Q |
99 |
ttcacatcaatagtttccttccttccaagatgatcattcttttacttggaagtgttgtttcaattttagctttaatggttatttcgccgacaattgcatg |
198 |
Q |
| |
|
||||||||||||||||||| || | || |||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |
|
|
| T |
992 |
ttcacatcaatagtttcctcccattcatgatggtaattcttttacttggaagtgttgtttcaattttagcattgatggttatttcgccgacaattgcttg |
1091 |
T |
|
| Q |
199 |
gatttatttgggttt |
213 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1092 |
gatttatttgggttt |
1106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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