View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16732_low_14 (Length: 447)
Name: NF16732_low_14
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 109 - 283
Target Start/End: Complemental strand, 4187197 - 4187023
Alignment:
| Q |
109 |
aagaaggagactcgacatcaagagtcccactagtttgcttctcaaaccaatcatgggatgttggttgaccaatatagacacttgcagaaaaatgattcaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4187197 |
aagaaggagactcgacatcaagagtcccactagtttgcttctcaaaccaatcatgcgatgttggttgaccaatatagacacttgcagaaaaatgattgaa |
4187098 |
T |
|
| Q |
209 |
agtgaactgaacatgttgaataccagtcacagaaaaactagcaattacaaacaaaaccctctcaccccaattagg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4187097 |
agtgaactgaacatgttgaataccagtcacagaaaaactagcaattacaaacaaaactctctcaccccaattagg |
4187023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 42 - 283
Target Start/End: Complemental strand, 4196296 - 4196055
Alignment:
| Q |
42 |
cgtggaagccacggaaacaggtggtgttcaatctgaaatcgcaaacccccatgaaaccaatccatctaagaaggagactcgacatcaagagtcccactag |
141 |
Q |
| |
|
|||||||| | |||||||| || || ||||||||||| ||||||| |||||||||||||||||| |||||| | ||| ||||||||||| ||| || |
|
|
| T |
4196296 |
cgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaagaagaacacttcacatcaagagttccatgag |
4196197 |
T |
|
| Q |
142 |
tttgcttctcaaaccaatcatgggatgttggttgaccaatatagacacttgcagaaaaatgattcaaagtgaactgaacatgttgaataccagtcacaga |
241 |
Q |
| |
|
||||||||||||||||||||| | || ||| |||||| ||| ||||| || ||||||||||||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
4196196 |
cttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacatgttgaatcccagtcacaca |
4196097 |
T |
|
| Q |
242 |
aaaactagcaattacaaacaaaaccctctcaccccaattagg |
283 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
4196096 |
aaaactagcaagcacaaataaaaccctctcaccccaattagg |
4196055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 338 - 428
Target Start/End: Complemental strand, 4186968 - 4186878
Alignment:
| Q |
338 |
ttctatctttctattgggaactttcctactagacagtagcaagaaaaaagattgagcaaacaaattgaacctagctaaccacataccagga |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
4186968 |
ttctatctttctattgggaactttcctattagacagtagcaagaaaaaagatcgagcaaacaaattgaacctagctaaacatataccagga |
4186878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University