View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_16 (Length: 423)
Name: NF16732_low_16
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 24998780 - 24998405
Alignment:
| Q |
1 |
agccagcaggaaactgcaaaatcaactcaacttattagaactctcaccaacaacaccaatttcacctccttccttttctccatcaccacagaatttggat |
100 |
Q |
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||||| |||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24998780 |
agccaacaggaagctgcaaaatcaaatcaacttattagaactctcaacaacaacaccaatttcacctccttccttttctccatcaccacagaatttggat |
24998681 |
T |
|
| Q |
101 |
aatgtcgttccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaacacacagaca |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24998680 |
aatgtcgtaccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaacacacagaca |
24998581 |
T |
|
| Q |
201 |
cttacctgttttaattagatttacatgttatagtatcataattcatttatctcttttgtatttttattattcaaagtgattatcgattcatcatatatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24998580 |
cttacctgttttaattagatttacatgttatagtatcataattcatttatctcttttgtatttttattattcaaagtgattatcgattcatcatctatac |
24998481 |
T |
|
| Q |
301 |
aaaggttgttgttctttatattattttctttgggagtttttatgcataaatggagtcttattgttgtttgcacgcaatt |
379 |
Q |
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| T |
24998480 |
-atgagtgttgttctttattttataat-tttgggattttttatgcat-aatgacgtcttattattgtgtgcacgcaatt |
24998405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 25002778 - 25002975
Alignment:
| Q |
1 |
agccagcaggaaactgcaaaatcaactcaacttattagaactctcaccaacaacaccaatttcacctccttccttttctccatcaccacagaatttggat |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||| | | |||||| ||| |||| || ||||||| ||| ||||||||||||| |
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| T |
25002778 |
agccagcaggaaactgcaaaatcaaatcaacttattagatctctctcaactctcaccaacttcttctccctc---ttctccaccacaacagaatttggat |
25002874 |
T |
|
| Q |
101 |
aatgtcgttccttgcttcgatcccacctttaaccgccctcgctgccttgctaggaagaaactcttcgcggttacacccgtttttactgaacacacagaca |
200 |
Q |
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|| || ||||| |||||| | || ||| ||||||||||||| ||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||| |
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| T |
25002875 |
aacgttgttccatgcttcaacccaaccattaaccgccctcgatgcctcgctagaaagaaacttttcgctgttacacctgtttttactgaacacacagaca |
25002974 |
T |
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