View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_18 (Length: 420)

Name: NF16732_low_18
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_18
NF16732_low_18
[»] chr4 (2 HSPs)
chr4 (18-404)||(13615789-13616174)
chr4 (318-410)||(20297125-20297217)
[»] chr1 (2 HSPs)
chr1 (18-401)||(7582262-7582646)
chr1 (27-404)||(7098609-7098987)
[»] chr5 (7 HSPs)
chr5 (23-384)||(17982108-17982470)
chr5 (219-292)||(17418809-17418883)
chr5 (219-285)||(30243019-30243086)
chr5 (140-285)||(29871496-29871642)
chr5 (156-281)||(30399391-30399517)
chr5 (156-292)||(30714074-30714211)
chr5 (156-279)||(30748969-30749093)
[»] chr7 (1 HSPs)
chr7 (314-382)||(26706817-26706885)


Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 13615789 - 13616174
Alignment:
Q  18 aattctcatctccacaccattttcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagt 117  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13615789 aattctcatctccacaccattttcaaattcatcctcattcaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagt 13615888  T
Q  118 gatgaaaaccgttctcaatgcatgcaatccttaactttaagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaat 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13615889 gatgaaaaccgttctcaatgcacgcaatccttaactttaagagtaactaaattactatgagttctgatccaacttgagaagcataatcctttgtaagaat 13615988  T
Q  218 atattttcaagctcttgagatttgtatgaggtgaagcacttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccat 317  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13615989 atattttcaagctcttgagatttgga-gaggtgaagcacttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccat 13616087  T
Q  318 gacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacctatattttgtaagcctttg 404  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13616088 gacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacctatattttgtaagcctttg 13616174  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 410
Target Start/End: Complemental strand, 20297217 - 20297125
Alignment:
Q  318 gacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacctatattttgtaagcctttgctactc 410  Q
    |||||| |||||||||  |||||| ||||| |||| ||| ||||||||||||||||| ||| ||| || | || || |||||||||| |||||    
T  20297217 gacaagcataattcatgaaggtcttttttacccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttgatactc 20297125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 7582646 - 7582262
Alignment:
Q  18 aattctcatctccacaccattttcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagt 117  Q
    ||||||||  |||| |||||| | ||||||||| |||||||||| ||||||||||||   || ||  || |||  |||||||||||||||||||||||||    
T  7582646 aattctcacttccaaaccattgtgaaattcatcatcatccaagtatttcacagacaccaaggttatttgaagtgtttttagagatggtagtttaccaagt 7582547  T
Q  118 gatgaaaaccgttctcaatgcatgcaatccttaactttaagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaat 217  Q
    |||||||||||||| || ||||||||| |||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||    
T  7582546 gatgaaaaccgttcacagtgcatgcaacccttaatttcaagagtaactaaattaccaagagttctgatccaacttgggaagcataaacctttgtaaaaat 7582447  T
Q  218 atattttcaagctcttgagatttgtatgagg-tgaagcacttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgcca 316  Q
     |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||  |||    
T  7582446 ctattttcaagctcttgagatttgtgtgaggttgaagcacttcaagtacttgatcgtcactaataatagtggtcttaacagatgaatcattgtgcaacca 7582347  T
Q  317 tgacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacctatattttgtaagcct 401  Q
    ||||||| ||||||||||||||||| ||||| |||| ||  ||||||||||||||||| |||||||||| | |||| ||||||||    
T  7582346 tgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatttggtaagcct 7582262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 27 - 404
Target Start/End: Original strand, 7098609 - 7098987
Alignment:
Q  27 ctccacaccattttcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatgaaaac 126  Q
    ||||| |||||| | ||||||||  |||||||||| ||||||||||||   | ||||   ||||| ||||||| ||||||||||||||||||||||||||    
T  7098609 ctccataccattgtgaaattcattatcatccaagtatttcacagacacaccgaataatatgagtttttttagatatggtagtttaccaagtgatgaaaac 7098708  T
Q  127 cgttctcaatgcatgcaatccttaactttaagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttca 226  Q
    ||||| |||||  |||||     ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||||    
T  7098709 cgttcacaatgattgcaagaaccaacttcaagagtaactaaattactaagagttctgatccaacttggaaagcataatccttggtaagaatgtattttca 7098808  T
Q  227 agctcttgagatttgtatgagg-tgaagcacttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccatgacaagaa 325  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||| |||||||||| || |||      || |||||||||| |    
T  7098809 agctcttgagatttgtatgaggttgaagcacttcaattacttgatcatcactgataacaggagtcttgacaggtgtatcaccacccttccatgacaagca 7098908  T
Q  326 taattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactacctatattttgtaagcctttg 404  Q
    |||||||||||||||| ||||| |||||||| ||||||||| ||||||| |||||||||| | ||||||||||||||||    
T  7098909 taattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 7098987  T

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Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 384
Target Start/End: Original strand, 17982108 - 17982470
Alignment:
Q  23 tcatctccacaccattttcaaattcatcctcatccaagtgtttcacagacactttggataaatggagttcttttagagatggtagtttaccaagtgatga 122  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||| |||  |  |||| ||||||||||||||||||||||||||||||    
T  17982108 tcatctccacaccattttcaaattcatcatcatccaagtatttcacagacacattgaatagttcaagtttttttagagatggtagtttaccaagtgatga 17982207  T
Q  123 aaaccgttctcaatgcatgcaatccttaactttaagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatatt 222  Q
    ||||||||| ||| ||||||||||||||||  ||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||    
T  17982208 aaaccgttcacaaagcatgcaatccttaacaataagagtaagtaaattgctaagagttctgatccaacttgggaagcataatccttggtaataatatatt 17982307  T
Q  223 ttcaagctcttgagatttgtatgagg-tgaagcacttcaagtacttgatcatcactaataataggggtcttgacagatgaatctttgtgctgccatgaca 321  Q
    ||||||| ||| |||||| | ||||| ||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  17982308 ttcaagcccttaagatttctgtgaggttgaagcacttcaaatacacgatcatcactaataataggggtcttgacagatgaaccttggtgccgccatgaca 17982407  T
Q  322 agaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaactac 384  Q
     | ||||||||| ||||||| ||||| | || ||| | ||||||| | ||||| |||||||||    
T  17982408 ggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac 17982470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 219 - 292
Target Start/End: Complemental strand, 17418883 - 17418809
Alignment:
Q  219 tattttcaagctcttgagatttgtatgaggt-gaagcacttcaagtacttgatcatcactaataataggggtctt 292  Q
    ||||||||||| |||||||||||  |||||| ||||||||||||||| ||| ||| |||||| ||||||||||||    
T  17418883 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtagttgctcagcactaacaataggggtctt 17418809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 30243086 - 30243019
Alignment:
Q  219 tattttcaagctcttgagatttgtatgaggt-gaagcacttcaagtacttgatcatcactaataatag 285  Q
    ||||||||||| |||||||||||  |||||| ||||||||||||||||||| ||| ||||||| ||||    
T  30243086 tattttcaagcacttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactaattatag 30243019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 285
Target Start/End: Original strand, 29871496 - 29871642
Alignment:
Q  140 tgcaatccttaactttaagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatt 239  Q
    ||||||||| || |||||||| || ||||||||||||| |  | ||||||||||  ||  |||||||||  ||  ||| |||| ||||||  ||||||||    
T  29871496 tgcaatcctcaagtttaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatt 29871595  T
Q  240 tgtatgagg-tgaagcacttcaagtacttgatcatcactaataatag 285  Q
    ||  ||||| |||||| |||| |||||||| ||| ||||||| ||||    
T  29871596 tgagtgaggttgaagctcttcgagtacttgctcagcactaattatag 29871642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 281
Target Start/End: Original strand, 30399391 - 30399517
Alignment:
Q  156 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagc 254  Q
    ||||| |||||||||||||||| |  | ||||||||||  ||  ||||||| |  ||  ||| ||||||||||| |||||||||||  ||||| ||||||    
T  30399391 aagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggttgaagc 30399490  T
Q  255 acttcaagtacttgatcatcactaata 281  Q
    ||||| |||||||| | | ||||||||    
T  30399491 acttcgagtacttgctgagcactaata 30399517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 292
Target Start/End: Complemental strand, 30714211 - 30714074
Alignment:
Q  156 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgagg-tgaagc 254  Q
    ||||| |||||||||||||||| |  | ||||||||||  ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  ||||| ||||||    
T  30714211 aagagaaactaaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagc 30714112  T
Q  255 acttcaagtacttgatcatcactaataataggggtctt 292  Q
     |||| |||||||| ||| |||||| || |||||||||    
T  30714111 tcttcgagtacttgctcagcactaacaacaggggtctt 30714074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 30748969 - 30749093
Alignment:
Q  156 aagagtaactaaattactaagagttctgatccaacttgagaagcataatcctttgtaagaatatattttcaagctcttgagatttgtatgaggt-gaagc 254  Q
    ||||| || ||||||||||||| |  | ||||||||||  ||  |||||||||  ||  ||| |||| ||||||  ||||||||||  |||||| |||||    
T  30748969 aagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagc 30749068  T
Q  255 acttcaagtacttgatcatcactaa 279  Q
    |||||||||||||| ||| ||||||    
T  30749069 acttcaagtacttgctcagcactaa 30749093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 26706817 - 26706885
Alignment:
Q  314 ccatgacaagaataattcatcgaggtctcttttatccattaaagtggcttcttgagcttcaaataaact 382  Q
    |||||||||| ||||||  ||||||| | ||||  |||| ||| ||||||||||||||||| |||||||    
T  26706817 ccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaact 26706885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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