View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16732_low_21 (Length: 381)
Name: NF16732_low_21
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 20575825 - 20575461
Alignment:
| Q |
1 |
ttagtgataagtacaaggttctagtaggtttggatattttcactaatggtattagaaaatcta----caaaatttatacttttggtgagaaattctttga |
96 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20575825 |
ttagtgataagtacacggttctagtaactttggatattttcactaa-ggtattagaaaatctatgaccaaaatttatacttttggtgagaaattctttga |
20575727 |
T |
|
| Q |
97 |
aaaccattccaaattgcccttgccccgacatttgggatgggaaatttgtgagtggcactttgaattgggtaatattgaaaataatcggtgttagttctaa |
196 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20575726 |
aaaccattccaaatttcccttgccccgacatttgggatgggaaatttgtgagtggcactttgaattgggtaatattgaaaataatcggtgttagttctaa |
20575627 |
T |
|
| Q |
197 |
tcaaaatgtgattatttcatttgattttgaaaaggagatttataagatttataatcttacgttgtgtgtttccaataactgtctttatgtgtgttttgac |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20575626 |
tcaaaatgtgattatttcatttgattttgaaaaggagattt---------ataatcttacgttgtgtgtttccaataactgtctttatgtgtgttttgac |
20575536 |
T |
|
| Q |
297 |
gagaacaaaactcatttggtttcgtggttgatgaaaatctatggaattgttgaatcttggactaggttgatgatg |
371 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20575535 |
gagaacaaaactcatttggtttcatggttgatgaaaatatatggaattgctgaatcttggactaggttgatgatg |
20575461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 20578530 - 20578286
Alignment:
| Q |
1 |
ttagtgataagtacaaggttctagtaggtttggatattttcactaatggtattagaaaatcta----caaaatttatacttttggtgagaaattctttga |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
20578530 |
ttagtgataagtacaaggttctagtaggttttaatattttcactaatggtattagaaaatctatgaccaaaatttatacttttggtgag-aattctttga |
20578432 |
T |
|
| Q |
97 |
aaaccattccaaattgcccttgccccgacatt---tgggatgggaaatttgtgagtggcactttgaattgggtaatattgaaaataatcggtgttagttc |
193 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
20578431 |
aaaccattccaaatttccctttccccgacatttggtgggatgggaaatttgtgagtggcactttgaattgggtaatgttgaa---aatgggtgttagttc |
20578335 |
T |
|
| Q |
194 |
taatcaaaatgtgattatttcatttgattttgaaaaggagatttataag |
242 |
Q |
| |
|
|| |||||||| ||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
20578334 |
tagtcaaaatgcgattatttcgtttgatcttgaaaaggagaattataag |
20578286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 254 - 371
Target Start/End: Complemental strand, 20578241 - 20578124
Alignment:
| Q |
254 |
tacgttgtgtgtttccaataactgtctttatgtgtgttttgacgagaacaaaactcatttggtttcgtggttgatgaaaatctatggaattgttgaatct |
353 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||| |||||| |
|
|
| T |
20578241 |
tacgttgtgtgtttccgataaccgtctttatgtgtgttttgacgagaacaaaactcatttggctctgtggttgatgaaaacatatggagttgctgaatcc |
20578142 |
T |
|
| Q |
354 |
tggactaggttgatgatg |
371 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
20578141 |
tggactaagttgatgatg |
20578124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 135 - 170
Target Start/End: Complemental strand, 20603841 - 20603806
Alignment:
| Q |
135 |
gggaaatttgtgagtggcactttgaattgggtaata |
170 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20603841 |
gggaaatttgtgagtggcactttaaattgggtaata |
20603806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 42694187 - 42694216
Alignment:
| Q |
135 |
gggaaatttgtgagtggcactttgaattgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42694187 |
gggaaatttgtgagtggcactttgaattgg |
42694216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 8838033 - 8838004
Alignment:
| Q |
135 |
gggaaatttgtgagtggcactttgaattgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8838033 |
gggaaatttgtgagtggcactttgaattgg |
8838004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 45089228 - 45089199
Alignment:
| Q |
135 |
gggaaatttgtgagtggcactttgaattgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45089228 |
gggaaatttgtgagtggcactttgaattgg |
45089199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 45095659 - 45095630
Alignment:
| Q |
135 |
gggaaatttgtgagtggcactttgaattgg |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45095659 |
gggaaatttgtgagtggcactttgaattgg |
45095630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University