View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_22 (Length: 376)

Name: NF16732_low_22
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_22
NF16732_low_22
[»] chr1 (4 HSPs)
chr1 (18-101)||(46268668-46268751)
chr1 (208-271)||(46268274-46268337)
chr1 (114-152)||(46268594-46268632)
chr1 (178-212)||(46268527-46268561)
[»] scaffold0015 (1 HSPs)
scaffold0015 (114-178)||(63446-63510)
[»] chr8 (1 HSPs)
chr8 (114-178)||(36339731-36339795)
[»] chr7 (1 HSPs)
chr7 (114-178)||(35819056-35819120)
[»] chr5 (2 HSPs)
chr5 (114-178)||(17131061-17131125)
chr5 (114-178)||(32243358-32243422)
[»] chr4 (3 HSPs)
chr4 (114-179)||(45147343-45147408)
chr4 (114-178)||(19752487-19752551)
chr4 (114-178)||(19787255-19787319)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 46268751 - 46268668
Alignment:
Q  18 agtattagttgatccaaatgtgtattacccataatatttatgactaattgttaataatgttgttattatttcagaaatccctta 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46268751 agtattagttgatccaaatgtgtattacccataatatttatgactaattgttaataatgttgttattatttcagaaatccctta 46268668  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 46268337 - 46268274
Alignment:
Q  208 tgtgtgcgtttgctccatcgtctcatgatgagcttggtcatgaagatgaagatggagaaatcac 271  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46268337 tgtgtgtgtttgctccatcgtctcatgatgagcttggtcatgaagatgaagatggagaaatcac 46268274  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 46268632 - 46268594
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccg 152  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  46268632 ctgtagatcgaccgatttgcaagggtttccccaccaccg 46268594  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 46268561 - 46268527
Alignment:
Q  178 tttcttctcttgcgggtccatggggatttttgtgt 212  Q
    ||||||||||||||||||||| |||||||||||||    
T  46268561 tttcttctcttgcgggtccatagggatttttgtgt 46268527  T

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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 63510 - 63446
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  63510 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 63446  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 36339731 - 36339795
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  36339731 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 36339795  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 35819056 - 35819120
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  35819056 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 35819120  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 17131061 - 17131125
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  17131061 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 17131125  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 32243358 - 32243422
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||    
T  32243358 ctgtagatcgaccaatttgcaagggtttccccaccaccgttcgcgtccaaatttcaggctcccgt 32243422  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 45147343 - 45147408
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgtt 179  Q
    ||||||||||||| ||||| |||||||||| |||||||||||  || ||||||| |||||||||||    
T  45147343 ctgtagatcgaccaatttgaaagggtttccccaccaccgttcacgtccaaatttcaggcttccgtt 45147408  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 19752487 - 19752551
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||| | |||||||||||| || ||||||| ||||| ||||    
T  19752487 ctgtagatcgaccaatttgcaagggttttcccaccaccgttcgcgtccaaatttcaggctcccgt 19752551  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 19787319 - 19787255
Alignment:
Q  114 ctgtagatcgaccgatttgcaagggtttcctcaccaccgttcgagttcaaatttaaggcttccgt 178  Q
    ||||||||||||| |||||||||||||| | |||||||||||| || ||||||| ||||| ||||    
T  19787319 ctgtagatcgaccaatttgcaagggttttcccaccaccgttcgcgtccaaatttcaggctcccgt 19787255  T

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