View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_23 (Length: 374)

Name: NF16732_low_23
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_23
NF16732_low_23
[»] chr3 (5 HSPs)
chr3 (21-370)||(31702667-31703016)
chr3 (171-374)||(31652636-31652843)
chr3 (11-149)||(31652418-31652556)
chr3 (34-81)||(28887381-28887428)
chr3 (38-83)||(17105259-17105304)
[»] chr6 (2 HSPs)
chr6 (27-83)||(29236244-29236300)
chr6 (51-84)||(10338619-10338652)
[»] chr8 (2 HSPs)
chr8 (38-80)||(12170590-12170632)
chr8 (38-80)||(12415018-12415060)
[»] chr5 (1 HSPs)
chr5 (51-92)||(28735820-28735862)
[»] chr2 (2 HSPs)
chr2 (22-83)||(16047687-16047747)
chr2 (51-83)||(22556248-22556280)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 370
Target Start/End: Original strand, 31702667 - 31703016
Alignment:
Q  21 tgacacaacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaatatatgtgtcatttttaaacatcatcacgtgtcgaac 120  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  31702667 tgacacaacactgatatatagacaccaataataatttaagaaaatagtagtgattgaatgtaatatatgtgtcgttgttagacatcatcacgtgtcgaac 31702766  T
Q  121 aacatacatgtcttcaatctaaaacgtcaactctacgaatctaaagcgcgatcatgattttttctatgcagatagcaattaaaatatttggaaaaatgct 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  31702767 aacatacatgtcttcaatctaaaacgtcaactctacgaatctaaagggtgatcatgattttttctatgcagatagcaattcaaatatttggaaatatgct 31702866  T
Q  221 ttatcgtcctgggacagattgtttaacagaatttccctcgccagaatcactcaaaaatatggtacttatatcaactaaatcaccaaaagaatataatcaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31702867 ttatcgtcctgggacagattgtttaacagaatttccctcgccagcatcactcaaaaatatggtacttatatcaactaaatcaccaaaagaatataatcaa 31702966  T
Q  321 tctgatagtgtcagcaatcaggtgttaaatggatgtgaatcatctgaaga 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31702967 tctgatagtgtcagcaatcaggtgttaaatggatgtgaatcatctgaaga 31703016  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 171 - 374
Target Start/End: Original strand, 31652636 - 31652843
Alignment:
Q  171 atcatgattttttctat----gcagatagcaattaaaatatttggaaaaatgctttatcgtcctgggacagattgtttaacagaatttccctcgccagaa 266  Q
    |||||||||||||||||    |||||| |||| | ||||||||||| ||||||||||| |||||  |||||||||| |||||||||||||||| |||| |    
T  31652636 atcatgattttttctattcatgcagatggcaaatcaaatatttggagaaatgctttattgtcctacgacagattgtataacagaatttccctcaccagca 31652735  T
Q  267 tcactcaaaaatatggtacttatatcaactaaatcaccaaaagaatataatcaatctgatagtgtcagcaatcaggtgttaaatggatgtgaatcatctg 366  Q
    ||||| ||||||||||||||||||||||||||| ||||||| || | |  |||| ||||| |||  | |||||| |||| ||| ||| ||||||| ||||    
T  31652736 tcactaaaaaatatggtacttatatcaactaaaccaccaaaggagtttcctcaaactgattgtgctaacaatcatgtgtcaaacggaagtgaatcgtctg 31652835  T
Q  367 aagatgaa 374  Q
    ||||||||    
T  31652836 aagatgaa 31652843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 31652418 - 31652556
Alignment:
Q  11 cacagatacatgacacaacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaatatatgtgtcatttttaaacatcatca 110  Q
    |||||| || |||||||||||||  | |||| |||| || ||||||||||||||||| |||||||||||||||||||  | || || | | ||| |||||    
T  31652418 cacagacacctgacacaacactgtcacatagtcaccgataataatttaagaaaatagaagtgattgaatgtaatatacttttcgttgtcagacaccatca 31652517  T
Q  111 cgtgtcgaacaacatacatgtcttcaatctaaaacgtca 149  Q
    ||||||| |||| || ||||| ||||||||||| |||||    
T  31652518 cgtgtcggacaatatgcatgttttcaatctaaagcgtca 31652556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 28887381 - 28887428
Alignment:
Q  34 atatatagacaccaatgataatttaagaaaatagtagtgattgaatgt 81  Q
    |||| ||||||||||| ||||||||||||||||| | |||||||||||    
T  28887381 atatgtagacaccaataataatttaagaaaatagaattgattgaatgt 28887428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 17105259 - 17105304
Alignment:
Q  38 atagacaccaatgataatttaagaaaatagtagtgattgaatgtaa 83  Q
    |||||||| ||| ||||||||||||||||  |||||||||||||||    
T  17105259 atagacactaataataatttaagaaaataaaagtgattgaatgtaa 17105304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 29236244 - 29236300
Alignment:
Q  27 aacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaa 83  Q
    |||||| |||| ||||||| ||| ||||||| ||||||||| |||||||||||||||    
T  29236244 aacacttatatgtagacactaataataatttgagaaaatagaagtgattgaatgtaa 29236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 10338619 - 10338652
Alignment:
Q  51 ataatttaagaaaatagtagtgattgaatgtaat 84  Q
    ||||||||||||||||| ||||||||||||||||    
T  10338619 ataatttaagaaaatagaagtgattgaatgtaat 10338652  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 12170590 - 12170632
Alignment:
Q  38 atagacaccaatgataatttaagaaaatagtagtgattgaatg 80  Q
    |||||||||||| ||||||||||||||||  ||||||||||||    
T  12170590 atagacaccaataataatttaagaaaataaaagtgattgaatg 12170632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 12415018 - 12415060
Alignment:
Q  38 atagacaccaatgataatttaagaaaatagtagtgattgaatg 80  Q
    |||||||||||| ||||||||||||||||  ||||||||||||    
T  12415018 atagacaccaataataatttaagaaaataaaagtgattgaatg 12415060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 28735862 - 28735820
Alignment:
Q  51 ataatttaagaaaatagtagtgattgaatgtaa-tatatgtgt 92  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  28735862 ataatttaagaaaatagaagtgattgaatgtaattatatgtgt 28735820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 16047747 - 16047687
Alignment:
Q  22 gacacaacactgatatatagacaccaatgataatttaagaaaatagtagtgattgaatgtaa 83  Q
    |||| |||||||| || | ||||||||| |||||||||| |||||| |||||||||||||||    
T  16047747 gacagaacactgacatgtggacaccaataataatttaag-aaatagaagtgattgaatgtaa 16047687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 22556248 - 22556280
Alignment:
Q  51 ataatttaagaaaatagtagtgattgaatgtaa 83  Q
    ||||||||||||||||| |||||||||||||||    
T  22556248 ataatttaagaaaatagaagtgattgaatgtaa 22556280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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