View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_24 (Length: 364)
Name: NF16732_low_24
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 29765229 - 29764887
Alignment:
| Q |
19 |
acactattactattagtaccccaaaagagaagtcgcatgcatattatacaaaatcattgccccagccccaaaaaccaaaagaagggagcgtg-taaccta |
117 |
Q |
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| T |
29765229 |
acactattactattagtaccccaaaagagaagtcgcatgcatattatacaaaatcattgccccagccccaaaaaccaaaagaagggagcgtggtaaccta |
29765130 |
T |
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| Q |
118 |
tacacggttagca-------gtttggattagaaaaccttcacgcacaaaaaactgaaaaatgcacattttagcgattatcctttgtcgagcagcgagaca |
210 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29765129 |
tacatggttagcacttagcagtttggattagaaaaccttcacgcacaaaaaactgaaa--tgcacattttagcgattatcctttgtcgagcagcgagaca |
29765032 |
T |
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| Q |
211 |
atttccattcagtctgcttggatttgggcttcttgagcttggaaatgaatccatcatcatcggattcatcgctgttatcacctttcttcttaccacgttt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29765031 |
atttccattcagtctgcttggatttgggcttcttgagcttggaaatgaatccatcatcatcggattcatcgctgttatcacctttcttcttaccacgttt |
29764932 |
T |
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| Q |
311 |
cttctcagcttttccacaaaccacaattctgctttcgttcttctc |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29764931 |
cttctcagcttttccacaaaccacaattctgctttcgtccttctc |
29764887 |
T |
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