View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_25 (Length: 359)
Name: NF16732_low_25
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 12609062 - 12608787
Alignment:
| Q |
9 |
gaaatgaagaggaaaggtgaccaatttaacttatcctcttatccttggttcattcagctgaaagatctggcacaatctccatgatacaaaaagtacaaac |
108 |
Q |
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| T |
12609062 |
gaaatgaagaggaaaggtgaccaatttaacttatcctcttatccttggttcattcagctaaaaaatctggcacaatctccatgatacaaaaagtacaaac |
12608963 |
T |
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| Q |
109 |
atactatataaagtatagggggaaaaagtgaagtagcatttcaataaatcatttgattg-ttttttcattggaataaacctcagagaatggatggattct |
207 |
Q |
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| T |
12608962 |
aaactatataaagtata-ggggaaaaggtgaagtagcatttcaataaatcatttgattgtttttttcattggaatagacgtcagagaatggatggattct |
12608864 |
T |
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| Q |
208 |
tctaaataagtnnnnnnnnngtatgtataaaacatagtaaacagacctcaaaaaggtttgaaatagctaaaagagcac |
285 |
Q |
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| T |
12608863 |
tctaaataagtaaagaaaaagtatgcataaaacatagt-aacagacctcaaaaaggtttgaaatagctaaaagagcac |
12608787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 12608771 - 12608736
Alignment:
| Q |
311 |
atccttaaaaataataattttcatctacttctttct |
346 |
Q |
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| T |
12608771 |
atccttaaaaataataattttcatctacttctttct |
12608736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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