View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_26 (Length: 351)

Name: NF16732_low_26
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_26
NF16732_low_26
[»] chr7 (1 HSPs)
chr7 (18-346)||(237303-237631)
[»] chr5 (2 HSPs)
chr5 (78-144)||(39756047-39756113)
chr5 (24-99)||(9722541-9722616)
[»] chr3 (2 HSPs)
chr3 (105-155)||(25874300-25874350)
chr3 (19-101)||(25875089-25875171)
[»] chr8 (1 HSPs)
chr8 (79-144)||(41776453-41776518)
[»] chr1 (2 HSPs)
chr1 (46-140)||(7534511-7534605)
chr1 (98-144)||(48626254-48626300)
[»] chr4 (1 HSPs)
chr4 (79-139)||(41377623-41377683)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 237631 - 237303
Alignment:
Q  18 actagggagaagagaaagtgagagataaagttggtgagtatgtggaggccacttggtcatgtgtcacttttgtgtgtagaggtacatggggtgtatgcca 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  237631 actagggagaagagaaagtgagagataaagttggtgagtgtgtggaggccacatggtcatgtgtcacttttgtgtgtagaggtacaaggggtgtatgcca 237532  T
Q  118 catggagtggtcaacctatcattgctcaaatttaaaaacatttcatgttgcaatgacttcaatgcgcttcacagtttccacaacaacgctaaccaccatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  237531 catggagtggtcaacctatcattgctcaaatttaaaaacatttcatgttacaatgacttcaatgcgcttcacagtttccacaacaacgctaaccaccatt 237432  T
Q  218 taaaactatactctcaactataagacttccaactcgaccacatatgttaagttcaacttagtcaactcctcagaccaatcccaactccactaccacccat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  237431 taaaactatactctcaactataagacttccaactcgaccacatatgttaagttcgacttagtcaactcctcagaccaatcccaactccactaccacccat 237332  T
Q  318 cggttgagggaactaaattagggtctgtg 346  Q
    | ||||||||||||  |||||||||||||    
T  237331 cagttgagggaactccattagggtctgtg 237303  T

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Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 39756047 - 39756113
Alignment:
Q  78 gtgtcacttttgtgtgtagaggtacatggggtgtatgccacatggagtggtcaacctatcattgctc 144  Q
    ||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||||||    
T  39756047 gtgtcacttttgtgtgtggaggtacaaggggtgtatgccacattgggtggtcaacctatcattgctc 39756113  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 9722616 - 9722541
Alignment:
Q  24 gagaagagaaagtgagagataaagttggtgagtatgtggaggccacttggtcatgtgtcacttttgtgtgtagagg 99  Q
    ||||||||||||||||||||||| ||||||||| ||||| ||| || | | || || |||||||| ||||||||||    
T  9722616 gagaagagaaagtgagagataaaattggtgagtgtgtgggggctacgtcgccacgtatcacttttatgtgtagagg 9722541  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 25874350 - 25874300
Alignment:
Q  105 ggggtgtatgccacatggagtggtcaacctatcattgctcaaatttaaaaa 155  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  25874350 ggggtgtatgccacatggggtggtcaacctatcattgctcaaatctaaaaa 25874300  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 25875171 - 25875089
Alignment:
Q  19 ctagggagaagagaaagtgagagataaagttggtgagtatgtggaggccacttggtcatgtgtcacttttgtgtgtagaggta 101  Q
    |||||||||||||| ||||||||||||| ||||||| | |||||||| ||| | | ||||||| |||||||||||||| ||||    
T  25875171 ctagggagaagagagagtgagagataaaattggtgattgtgtggaggtcacatcgccatgtgttacttttgtgtgtaggggta 25875089  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 41776453 - 41776518
Alignment:
Q  79 tgtcacttttgtgtgtagaggtacatggggtgtatgccacatggagtggtcaacctatcattgctc 144  Q
    ||||||||||||||||||| |||||  || ||||||||||||||||||||||| ||| ||||||||    
T  41776453 tgtcacttttgtgtgtagatgtacaatggatgtatgccacatggagtggtcaagctagcattgctc 41776518  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 7534605 - 7534511
Alignment:
Q  46 agttggtgagtatgtggaggccacttggtcatgtgtcacttttgtgtgtagaggtacatggggtgtatgccacatggagtggtcaacctatcatt 140  Q
    ||||||||||| ||||  || ||| | ||||  |||||||||| ||||| |||||||| ||||||||||  |||||| |||||||||||||||||    
T  7534605 agttggtgagtgtgtgagggtcacgtcgtcacatgtcacttttatgtgtggaggtacaaggggtgtatgttacatggggtggtcaacctatcatt 7534511  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 48626300 - 48626254
Alignment:
Q  98 ggtacatggggtgtatgccacatggagtggtcaacctatcattgctc 144  Q
    |||||| |||||||||||||||||| |||||||||||| ||||||||    
T  48626300 ggtacaaggggtgtatgccacatggggtggtcaacctaccattgctc 48626254  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 41377623 - 41377683
Alignment:
Q  79 tgtcacttttgtgtgtagaggtacatggggtgtatgccacatggagtggtcaacctatcat 139  Q
    |||||||||||||||||||||||||  || | |||| ||||||| ||||| ||||||||||    
T  41377623 tgtcacttttgtgtgtagaggtacaaaggatatatgtcacatggcgtggttaacctatcat 41377683  T

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