View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_3 (Length: 670)
Name: NF16732_low_3
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 13 - 654
Target Start/End: Original strand, 44144712 - 44145357
Alignment:
| Q |
13 |
agataatactgaacctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttctataaaacaa |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
44144712 |
agataatactgaatctattgttgattagtaaaattaaaaaacaatgctgacatggtattcttagaaagcatactatcttagacatgtttcaataaaaaaa |
44144811 |
T |
|
| Q |
113 |
taa----tcgtaaataaacaactataatatcaggtgttttatagtcaaaaaatgccatcaaatttagactcacttgcaagcttcgaataggaggattatt |
208 |
Q |
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| T |
44144812 |
aaaaaaatcgtaaataaacaaatataatatcaggtgttttattgtcaaaaaatgcaatcaaatttagactcacttgcaagtttcgaataggaggattatt |
44144911 |
T |
|
| Q |
209 |
ttattctttttgacatgaaaacaagattttcattagagacataataagtcataacaaatgcaattcatggcaaggtctggaccattttaaaaccaaagtc |
308 |
Q |
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| T |
44144912 |
ttaatttttttgacatgaaaataagattttcattagagaaataataagtcataacaaatgcaattcatggcaaggtctggaccattttacaaccaaagtc |
44145011 |
T |
|
| Q |
309 |
ctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttct |
408 |
Q |
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| T |
44145012 |
ctagaattcatgtgctgcagtatttctttacagtccagaattatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttct |
44145111 |
T |
|
| Q |
409 |
gcgtctgagtcaatgatcaaattgtggaaatcttgcatctgaacccattgcaaacaccatatcaaggccagagattcagccatcagaggagatagtgtaa |
508 |
Q |
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| T |
44145112 |
gcgtctgagtcaatgatcaaattgtggaaatcttgcatctaaacccgttgcaaacaccatatcaaggctagggattcaaccatcagaggagatagtgtaa |
44145211 |
T |
|
| Q |
509 |
tctcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacatt |
608 |
Q |
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| T |
44145212 |
tatcttccttccttgtagctgcgaaggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacatt |
44145311 |
T |
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| Q |
609 |
aattttcagcctctgtacaggtagagtaatggagtagccacatttg |
654 |
Q |
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| T |
44145312 |
aattttcagcctctgtacaggtagagtaatggagtagccacatttg |
44145357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 633
Target Start/End: Complemental strand, 44158411 - 44158099
Alignment:
| Q |
327 |
agtatttctttacagtccagaat--tatatggtcaatgtcagcatgctttcacctggctacccaagccgtgtgttaaagtttctgcgtctgagtcaatga |
424 |
Q |
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|||||||| ||| |||||||||| || ||| ||||||||||||||||| ||| || | ||| |||| |||| ||| | |||| | || | ||||||| |
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| T |
44158411 |
agtatttccttaaagtccagaatattaaatgatcaatgtcagcatgctt-cacttgtccaccaaagcagtgttttacaatttcaacatccgtctcaatga |
44158313 |
T |
|
| Q |
425 |
tcaaattgtggaaatcttgcatctgaacccattgcaaacaccatatcaaggccagagattcagccatcagaggagatagtgtaatc---tc--ttccttc |
519 |
Q |
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| T |
44158312 |
tcaaattgtgaaatttttgttgctgaacatgttgcaaacaccgtgtcaaggccagtgcttcagccatcaaaggagatattgcgatcgtttcgtttccttc |
44158213 |
T |
|
| Q |
520 |
cttgtagctgcgaa-ggccacagaacctgcataactgcgcactagaaagccataaccagtacaacattcaaaacaaccaacaccaacattaattttcagc |
618 |
Q |
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| T |
44158212 |
cttgtagccgcaaaaggtcacaggacctacaaagttgcgcac-acaaaaccataaccagtacaatattcaaaacaatcagcatcagcattagttttcagc |
44158114 |
T |
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| Q |
619 |
ctctgtacaggtaga |
633 |
Q |
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|| |||||||||||| |
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| T |
44158113 |
ctatgtacaggtaga |
44158099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 40893411 - 40893439
Alignment:
| Q |
304 |
aagtcctagaattcatgtgctgcagtatt |
332 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40893411 |
aagtcctagaattcatgtgctgcagtatt |
40893439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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