View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_30 (Length: 310)

Name: NF16732_low_30
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_30
NF16732_low_30
[»] chr8 (4 HSPs)
chr8 (204-300)||(5964952-5965048)
chr8 (225-280)||(5965091-5965146)
chr8 (186-221)||(5987406-5987441)
chr8 (119-149)||(5987355-5987385)
[»] chr2 (1 HSPs)
chr2 (236-276)||(39256687-39256727)
[»] chr1 (2 HSPs)
chr1 (236-280)||(25038287-25038331)
chr1 (236-280)||(25043499-25043543)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 204 - 300
Target Start/End: Original strand, 5964952 - 5965048
Alignment:
Q  204 tacgtaggggtaaccctttaatccccgacaaattgttagtttaacataatgttacctattaacatcaataagacattttagtatttaattatagaat 300  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  5964952 tacgtaggggtaaccctttaatccctgacaagttgttagtttaacgtaatgtttcctattaacatcaataagacattttagtattaaattatggaat 5965048  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 5965146 - 5965091
Alignment:
Q  225 tccccgacaaattgttagtttaacataatgttacctattaacatcaataagacatt 280  Q
    |||| ||||| ||||||||||||||||||| |||||| |||||| |||||||||||    
T  5965146 tccctgacaagttgttagtttaacataatgctacctactaacattaataagacatt 5965091  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 5987406 - 5987441
Alignment:
Q  186 tctagaatgtttacagtttacgtaggggtaaccctt 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  5987406 tctagaatgtttacagtttacgtaggggtaaccctt 5987441  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 149
Target Start/End: Original strand, 5987355 - 5987385
Alignment:
Q  119 agcaatggttccttaataggggttccttagg 149  Q
    |||||||||||||||||||||||||||||||    
T  5987355 agcaatggttccttaataggggttccttagg 5987385  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 39256727 - 39256687
Alignment:
Q  236 ttgttagtttaacataatgttacctattaacatcaataaga 276  Q
    |||||||||| |||||||| |||||| ||||||||||||||    
T  39256727 ttgttagttttacataatgctacctactaacatcaataaga 39256687  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 25038287 - 25038331
Alignment:
Q  236 ttgttagtttaacataatgttacctattaacatcaataagacatt 280  Q
    |||||||||||||| |||| |||||| ||||| ||||||||||||    
T  25038287 ttgttagtttaacagaatgctacctactaacaacaataagacatt 25038331  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 280
Target Start/End: Original strand, 25043499 - 25043543
Alignment:
Q  236 ttgttagtttaacataatgttacctattaacatcaataagacatt 280  Q
    |||||||||||||| |||| |||||| ||||| ||||||||||||    
T  25043499 ttgttagtttaacagaatgctacctactaacaacaataagacatt 25043543  T

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