View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_31 (Length: 309)
Name: NF16732_low_31
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 16868149 - 16867882
Alignment:
| Q |
17 |
aatatgtacctcaaaattggaagttttttcatatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttca |
116 |
Q |
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| T |
16868149 |
aatatgtacctcaaaattggaagttttttcatatctgaaaagaagaagatggccatgagctagagagtgatgctctgcaaattgtttccaacccttttca |
16868050 |
T |
|
| Q |
117 |
aaacatatcttgccatcactttttaccaaatttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttct |
216 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16868049 |
aaccatatcttgccatcactttttaccaaatttaatttccattttccaccatttggagtctttagacatgtttcttttggtagactttttccatatttct |
16867950 |
T |
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| Q |
217 |
ccacaaattttcttggcatcatctgtcaattaattacaccatattattttcccactctatattagttt |
284 |
Q |
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| T |
16867949 |
ccacaaattttcttggcatcatctgtcaattaattacaccatattattttcccactctatattagttt |
16867882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 17605697 - 17605463
Alignment:
| Q |
21 |
tgtacctcaaaattggaagttttttcatatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaac |
120 |
Q |
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| T |
17605697 |
tgtacctcaaatttggaagttttttcatatctgaaaagcagaagatggccatgacctatagagtgatgctctgcaaattgtttccaacccttctcaaacc |
17605598 |
T |
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| Q |
121 |
atatcttgccatcactttttaccaaatttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttctccac |
220 |
Q |
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| T |
17605597 |
atatcttgccatcactcttaaccaaatttaatctccattttgcaccatttggagtctttagacatatagcttttggtagaccttttccatatttttccac |
17605498 |
T |
|
| Q |
221 |
aaattttcttggcatcatctgtcaattaattacac |
255 |
Q |
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||| |||||||||||| ||||| |||||||||||| |
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| T |
17605497 |
aaactttcttggcatcctctgttaattaattacac |
17605463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 262
Target Start/End: Complemental strand, 16863247 - 16863032
Alignment:
| Q |
47 |
atatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaacatatcttgccatcactttttaccaaa |
146 |
Q |
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|||| ||||||| ||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||| | |||||| |||| |
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| T |
16863247 |
atatttgaaaagcagaagatggccatgagctagagaatgatgctctgcaaattctttccaacccttttcaaaccatatcttgccattaatttttagcaaa |
16863148 |
T |
|
| Q |
147 |
tttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttctccacaaattttcttggcatcatctgtcaat |
246 |
Q |
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|||| ||||| ||| |||||||||||||||||||| || | | |||| | || || |||||||||||||||||| |||||||||||||||| ||||| |
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| T |
16863147 |
tttaatttccactttgcaccatttggagtctttagatatatagcatttgataaaccttctccatatttctccacaaactttcttggcatcatctatcaat |
16863048 |
T |
|
| Q |
247 |
taattacaccatatta |
262 |
Q |
| |
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|||||| |||| |||| |
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| T |
16863047 |
taattaaaccaaatta |
16863032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 47 - 252
Target Start/End: Complemental strand, 16873228 - 16873023
Alignment:
| Q |
47 |
atatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaacatatcttgccatcactttttaccaaa |
146 |
Q |
| |
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|||| ||||||| ||||||| |||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||| || |||||||||||||||||| |
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| T |
16873228 |
atatttgaaaagcagaagatggccatgtgctagagagtgatgctttgcaaattctttccaacccttttcaaaccatatttttccatcactttttaccaaa |
16873129 |
T |
|
| Q |
147 |
tttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttctccacaaattttcttggcatcatctgtcaat |
246 |
Q |
| |
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|||| ||||| || | || ||||||||||||||| || | |||||| | || || |||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
16873128 |
tttaatttccacttcgccccgtttggagtctttagatatatagcttttgataaaccttctccatatttctctacaaactttctcggcatcatctgtcaat |
16873029 |
T |
|
| Q |
247 |
taatta |
252 |
Q |
| |
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|||||| |
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|
| T |
16873028 |
taatta |
16873023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 17612690 - 17612457
Alignment:
| Q |
29 |
aaaattggaagttttttcatatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaacatatcttg |
128 |
Q |
| |
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||||| ||||||| || ||||| ||||||| ||||||| ||| |||| || ||| |||| || |||||| |||||||||||||||||| ||||| || |
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| T |
17612690 |
aaaatgggaagttcttccatatttgaaaagcagaagatggccttgagataaagaatgatacttcacaaattctttccaacccttttcaaaccatatttta |
17612591 |
T |
|
| Q |
129 |
ccatcactttttaccaaatttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttctccacaaattttc |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||| || | | |||| | || || |||||||||||||||||| |||| |
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| T |
17612590 |
ccatcactttttaccaaatttaatttccactttgcaccatttggagtctttagatatatagcatttgataaaccttctccatatttctccacaaactttc |
17612491 |
T |
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| Q |
229 |
ttggcatcatctgtcaattaattacaccatatta |
262 |
Q |
| |
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|||| || |||||||| ||||||| ||||||||| |
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| T |
17612490 |
ttgggattatctgtcagttaattaaaccatatta |
17612457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 16889249 - 16889026
Alignment:
| Q |
29 |
aaaattggaagttttttcatatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaacatatcttg |
128 |
Q |
| |
|
||||| ||||||| |||||||| |||||| |||||||| | || |||||| |||| || ||||||||| ||||||||||||| ||| ||||||||| |
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| T |
16889249 |
aaaatgggaagttctttcatatttgaaaataagaagatggtattgtgctagattatgatactttgcaaattgcttccaacccttttgaaaccatatcttg |
16889150 |
T |
|
| Q |
129 |
ccatcactttttaccaaatttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttctccacaaattttc |
228 |
Q |
| |
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|||||| |||||||||||| || ||||| ||| ||||| |||||||||||||| || | | ||||| | || |||| ||||||||| ||||| |||| |
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| T |
16889149 |
ccatcaatttttaccaaatctaatttccactttgcaccacttggagtctttagatatatagcatttggtaaacaatttcgatatttctctacaaactttc |
16889050 |
T |
|
| Q |
229 |
ttggcatcatctgtcaattaatta |
252 |
Q |
| |
|
|||| |||||||||||||| |||| |
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| T |
16889049 |
ttggaatcatctgtcaatttatta |
16889026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 45269783 - 45269577
Alignment:
| Q |
35 |
ggaagttttttcatatctgaaaagaagaagatagccatgagctagagagtgatgctctgcaaattgtttccaacccttttcaaaacatatcttgccatca |
134 |
Q |
| |
|
||||||| |||||||| | ||||| || |||| ||||||||||||||| |||| ||||||||||| |||||| ||||||| ||| ||||| ||||||||| |
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| T |
45269783 |
ggaagttctttcatatttaaaaagcaggagatggccatgagctagagaatgatactctgcaaattctttccatcccttttgaaaccatattttgccatca |
45269684 |
T |
|
| Q |
135 |
ctttttaccaaatttatattccattttccaccatttggagtctttagacatgtttcttttggaagactttttccatatttctccacaaattttcttggca |
234 |
Q |
| |
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|||||||||||||||| ||||| ||| |||||||||||||||||| |||| | ||| || | | || |||||||||||||||||| |||||||||| |
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| T |
45269683 |
ctttttaccaaatttaatttccaatttacaccatttggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggca |
45269584 |
T |
|
| Q |
235 |
tcatctg |
241 |
Q |
| |
|
||||||| |
|
|
| T |
45269583 |
tcatctg |
45269577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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