View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_33 (Length: 298)
Name: NF16732_low_33
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_33 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 2464547 - 2464402
Alignment:
| Q |
19 |
catgaatagaaaaacttggctcctaatttccaccaattttaacgtagtttttattaaggtggattagattaaagggaaccaactcgagagtttaactttt |
118 |
Q |
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| T |
2464547 |
catgaatagaaaaacttggctcctaatttccaccaattttaacgtagtttttattaaggtggattagattaaagggaaccaactcgagagtttaactttc |
2464448 |
T |
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| Q |
119 |
tgtgtagagtgattaagaaatcaagctacaatatggactattcaac |
164 |
Q |
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| T |
2464447 |
tgtgtagagtgattaagaaatcaagctacaatatgtactattcaac |
2464402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 2456646 - 2456552
Alignment:
| Q |
71 |
attaaggtggattagattaaagggaaccaactcgagagtttaactttttgtgta-gagtgattaagaaatcaagctacaatatggactattcaac |
164 |
Q |
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| T |
2456646 |
attaaggtggattagattaaagggcactaacccgagaatttaacatttggtgtttgactgattaagaaatcaagctacaatatgggctattcaac |
2456552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 41321283 - 41321312
Alignment:
| Q |
269 |
tacaatttttgtgacaactttctttctcat |
298 |
Q |
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| T |
41321283 |
tacaatttttgtgacaactttctttctcat |
41321312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 38134381 - 38134410
Alignment:
| Q |
269 |
tacaatttttgtgacaactttctttctcat |
298 |
Q |
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| T |
38134381 |
tacaatttttgtgacaactttctttctcat |
38134410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 13735157 - 13735186
Alignment:
| Q |
269 |
tacaatttttgtgacaactttctttctcat |
298 |
Q |
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| T |
13735157 |
tacaatttttgtgacaactttctttctcat |
13735186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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