View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_34 (Length: 293)
Name: NF16732_low_34
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 29765555 - 29765777
Alignment:
| Q |
13 |
aatatctacatgtatttaccatgagtaaaccatcattttgggtatgaaattgtaagtgtatgataatttgggacttcaaatatacaaaatattaagttgc |
112 |
Q |
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| T |
29765555 |
aataactacatgtatttaccatgagtaaaccaccattttgggtatggaattgtaagtgtatgataatttgggacttcaaatatacaaaatatcaagttgc |
29765654 |
T |
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| Q |
113 |
gcccttagagtctttaatgtgagtcaaaatgctcacttaatcaagtaattatgtttgaagtgatactgtgtcacgttatgtgacaacttaatttattcct |
212 |
Q |
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| T |
29765655 |
--ccttag--tctttaatgtgagtcaaaatgctcaccctatcaagtaattatgtttgaagtgatattgtgtcacgttaagtgacaacataatttatccct |
29765750 |
T |
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| Q |
213 |
acgtgaatacctaaacacaagttttat |
239 |
Q |
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| T |
29765751 |
acgtgaatacctaaacacaagttttat |
29765777 |
T |
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