View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_35 (Length: 291)

Name: NF16732_low_35
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_35
NF16732_low_35
[»] chr3 (19 HSPs)
chr3 (1-284)||(27747422-27747705)
chr3 (10-181)||(26046864-26047033)
chr3 (1-202)||(27608721-27608923)
chr3 (1-198)||(34497194-34497392)
chr3 (1-179)||(53497199-53497375)
chr3 (1-202)||(42340095-42340297)
chr3 (1-181)||(2121248-2121426)
chr3 (1-198)||(19117542-19117740)
chr3 (1-202)||(55199678-55199880)
chr3 (3-202)||(31341543-31341743)
chr3 (4-181)||(2615653-2615828)
chr3 (1-202)||(55213492-55213694)
chr3 (1-181)||(11020023-11020200)
chr3 (23-97)||(647094-647168)
chr3 (2-63)||(24176938-24176999)
chr3 (1-103)||(46007466-46007568)
chr3 (32-181)||(48227566-48227713)
chr3 (4-103)||(1702807-1702906)
chr3 (34-90)||(49525125-49525181)
[»] chr5 (20 HSPs)
chr5 (1-202)||(20205122-20205324)
chr5 (1-202)||(41940554-41940757)
chr5 (15-181)||(11375364-11375528)
chr5 (4-181)||(25730978-25731153)
chr5 (1-181)||(8388253-8388431)
chr5 (1-171)||(27532758-27532926)
chr5 (1-181)||(27292601-27292778)
chr5 (5-181)||(32632686-32632859)
chr5 (1-103)||(4268266-4268368)
chr5 (4-138)||(23075002-23075134)
chr5 (4-97)||(15988673-15988766)
chr5 (4-92)||(26597386-26597474)
chr5 (25-181)||(22767115-22767269)
chr5 (1-181)||(30573519-30573697)
chr5 (4-103)||(12660486-12660585)
chr5 (4-205)||(34652076-34652271)
chr5 (1-97)||(30222764-30222858)
chr5 (1-65)||(31908352-31908416)
chr5 (34-193)||(26076480-26076641)
chr5 (126-202)||(26597284-26597363)
[»] chr7 (19 HSPs)
chr7 (1-181)||(16732100-16732278)
chr7 (1-181)||(17710234-17710412)
chr7 (1-202)||(29200774-29200975)
chr7 (6-181)||(9328444-9328617)
chr7 (4-194)||(30824322-30824511)
chr7 (12-202)||(33224378-33224569)
chr7 (1-202)||(3601819-3602021)
chr7 (14-204)||(24251619-24251807)
chr7 (14-202)||(44481267-44481456)
chr7 (1-181)||(3275201-3275380)
chr7 (1-193)||(17877565-17877758)
chr7 (1-181)||(47580042-47580219)
chr7 (4-181)||(16098660-16098838)
chr7 (1-92)||(22289408-22289499)
chr7 (1-157)||(30493476-30493630)
chr7 (5-181)||(1581787-1581962)
chr7 (51-181)||(24139228-24139356)
chr7 (32-102)||(35030573-35030643)
chr7 (29-103)||(6216488-6216562)
[»] chr4 (27 HSPs)
chr4 (1-190)||(37245685-37245872)
chr4 (5-181)||(32576890-32577064)
chr4 (5-202)||(28426354-28426552)
chr4 (5-202)||(49119218-49119416)
chr4 (1-181)||(2065020-2065198)
chr4 (1-181)||(49951480-49951658)
chr4 (4-202)||(51259347-51259546)
chr4 (5-181)||(26422444-26422618)
chr4 (16-181)||(21321712-21321875)
chr4 (4-181)||(51734814-51734989)
chr4 (4-181)||(44935924-44936099)
chr4 (1-181)||(18441989-18442167)
chr4 (1-181)||(56065800-56065978)
chr4 (7-181)||(24989776-24989948)
chr4 (3-181)||(8754305-8754481)
chr4 (21-202)||(23095401-23095580)
chr4 (1-181)||(41835154-41835331)
chr4 (4-202)||(29655484-29655683)
chr4 (1-92)||(28537716-28537807)
chr4 (115-202)||(6753937-6754027)
chr4 (1-73)||(55735176-55735248)
chr4 (1-181)||(47226174-47226350)
chr4 (123-202)||(10575267-10575349)
chr4 (40-93)||(40727169-40727222)
chr4 (126-181)||(55735305-55735360)
chr4 (4-69)||(7462612-7462677)
chr4 (29-57)||(54455527-54455555)
[»] chr2 (17 HSPs)
chr2 (5-181)||(9710126-9710300)
chr2 (1-202)||(12130456-12130658)
chr2 (1-198)||(34695726-34695924)
chr2 (1-198)||(34718138-34718336)
chr2 (1-181)||(88726-88904)
chr2 (1-181)||(25552312-25552490)
chr2 (1-181)||(26198849-26199027)
chr2 (2-174)||(13109721-13109888)
chr2 (1-202)||(14827247-14827448)
chr2 (4-181)||(11291907-11292080)
chr2 (1-85)||(1417917-1418001)
chr2 (4-103)||(18344212-18344311)
chr2 (1-181)||(35158684-35158865)
chr2 (5-103)||(44017236-44017334)
chr2 (11-97)||(10244494-10244580)
chr2 (6-97)||(36445443-36445534)
chr2 (115-181)||(1417832-1417900)
[»] chr1 (21 HSPs)
chr1 (1-181)||(5609506-5609684)
chr1 (3-202)||(4395327-4395527)
chr1 (2-181)||(16816639-16816816)
chr1 (1-198)||(48949546-48949744)
chr1 (1-202)||(51113482-51113684)
chr1 (1-202)||(44602919-44603116)
chr1 (4-181)||(36733866-36734035)
chr1 (1-181)||(2885390-2885572)
chr1 (3-181)||(25682820-25682996)
chr1 (1-181)||(44527420-44527599)
chr1 (2-96)||(24538655-24538749)
chr1 (4-151)||(52109623-52109768)
chr1 (7-103)||(14485183-14485279)
chr1 (8-175)||(21031323-21031488)
chr1 (19-177)||(48166412-48166568)
chr1 (67-181)||(5594267-5594379)
chr1 (4-61)||(38679056-38679113)
chr1 (22-97)||(4898544-4898619)
chr1 (33-103)||(17371647-17371717)
chr1 (140-181)||(3297042-3297083)
chr1 (40-97)||(23163357-23163414)
[»] chr8 (15 HSPs)
chr8 (1-181)||(13415190-13415368)
chr8 (4-181)||(477898-478073)
chr8 (4-177)||(33642610-33642781)
chr8 (1-181)||(40588572-40588750)
chr8 (1-202)||(598055-598257)
chr8 (1-190)||(185426-185611)
chr8 (1-153)||(3606607-3606759)
chr8 (1-157)||(11870431-11870585)
chr8 (4-149)||(7127393-7127536)
chr8 (16-202)||(36194439-36194626)
chr8 (1-102)||(23854099-23854200)
chr8 (4-94)||(8451050-8451140)
chr8 (1-94)||(37712240-37712333)
chr8 (4-103)||(9496948-9497047)
chr8 (123-181)||(34707887-34707945)
[»] chr6 (12 HSPs)
chr6 (1-182)||(14680329-14680508)
chr6 (1-181)||(11731511-11731689)
chr6 (1-181)||(15605836-15606014)
chr6 (1-181)||(21944470-21944648)
chr6 (1-153)||(34104335-34104485)
chr6 (1-154)||(27443097-27443251)
chr6 (4-103)||(28107309-28107408)
chr6 (4-81)||(3100415-3100493)
chr6 (5-91)||(19690809-19690895)
chr6 (1-96)||(29367981-29368076)
chr6 (16-154)||(15053044-15053180)
chr6 (123-181)||(3101267-3101324)
[»] scaffold0446 (1 HSPs)
scaffold0446 (1-181)||(357-535)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-103)||(182-284)
[»] scaffold0198 (1 HSPs)
scaffold0198 (6-157)||(20330-20479)
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-154)||(44110-44264)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 27747705 - 27747422
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27747705 tgctattgtttttagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatagttgctcatactttatct 27747606  T
Q  101 aggttgacagtctattcttgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgatagttaactttgctctggtaa 200  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27747605 aggttgacggtctattcttgggtagtcaccgtatttttgattcttatccttcttgtactcaacagtggttgattaataatagttaactttgctctggtaa 27747506  T
Q  201 aataatattactataaataggattcaaacttctcataaaccaagctcaaccacgtaaaacttttgttcttttgaacctttgctt 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27747505 aataatattactataaataggattcaaacttctcataaaccaagctcaaccacgtaaaacttttgttcttttgaacctttgctt 27747422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 26046864 - 26047033
Alignment:
Q  10 ttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgaca 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||| ||||||||||||||| ||||   | |     
T  26046864 ttctagtattatttatcagttatctttacattctaactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatactttagctag---ggcg 26046960  T
Q  110 gtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |  |||||||||| |||||||||||||||| ||||||||||||||| || | || | ||||||||||||||||    
T  26046961 gcttattcttgggctagtcaccgtatttttaattcttatccttcttatattaaatattggttgattaatgata 26047033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 27608923 - 27608721
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||||||  ||| ||    
T  27608923 tgctattgtttctagtattatttttcagttatctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcatagcttagct 27608824  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||     | | || |||||||| |||||||||||||||| |||||||||||||||||| | || | ||||| |||||||   ||||||||||||||| ||    
T  27608823 ag---agcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaatactggttaattaatgataatagttaactttgctttg 27608727  T
Q  197 gtaaaa 202  Q
    ||||||    
T  27608726 gtaaaa 27608721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34497392 - 34497194
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||  ||| ||    
T  34497392 tgctattgttcctagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagct 34497293  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | | | || |||||||| |||||||||||||||| ||| ||||||||| |||| | |||| |||||||||||||   ||||||||||||||| ||    
T  34497292 ag---ggcggcctgttcttgggctagtcaccgtattttttatttttatccttcatgtattgaacactggttgattaatgataatagttaactttgctttg 34497196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 53497199 - 53497375
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||| ||| |||||||| |||||| | ||||||||||||| ||    
T  53497199 tgctattgtttctagtattaattatcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttagct 53497298  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatga 179  Q
    ||   | ||| || |||||||| |||||||||||||||| ||| |||||||||||||| | |||| || |||||||||||    
T  53497299 ag---ggcagcctgttcttgggctagtcaccgtattttttattattatccttcttgtattgaacattgcttgattaatga 53497375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 42340297 - 42340095
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||| ||||||  |    
T  42340297 tgctattgtttctaatattatttatcagctatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcacactttagat 42340198  T
Q  101 aggttgacagtctattc-ttgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | | | || ||| |||| |||||||||||||||| ||| |||||||||||||| | || | |||||||| ||||   |||||||| |||||||||    
T  42340197 ag---ggcggcctgttctttggctagtcaccgtatttttaatttttatccttcttgtattgaagattggttgataaatgataatagttaaatttgctctg 42340101  T
Q  197 gtaaaa 202  Q
    ||||||    
T  42340100 gtaaaa 42340095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2121248 - 2121426
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||| ||||| |||||||||| |||||||| |||||| |||||||||||||||  |    
T  2121248 tgctattgtttctagtattatttatcagttatctttacatctcaacttcgaggtaaagtttgttaggagacaagcgaacatggttgctcatactttagtt 2121347  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | |||| |||||||| |||| ||||||||||| ||||||||| |||||||| |  ||| ||||||||| ||||||    
T  2121348 ag---ggcggtctgttcttgggttagttaccgtattttttattcttatcattcttgtattgcacattggttgattgatgata 2121426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19117740 - 19117542
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||| ||||||||||||||||||| ||||||   |||||||||||||||||  ||| ||    
T  19117740 tgctattgtttttagtattatttttcagttatttttgcattccaaatttgaggtgaagtttgttaggagacagtcgaacatagttgctcatagcttagct 19117641  T
Q  101 aggttgacagtctattctt-gggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||||   | | || ||||| || |||||||||||||||| |||||||||||||||||| | |||| ||||||||| |||   ||||||||||||||| ||    
T  19117640 aggt---cggcctgttcttaggctagtcaccgtatttttgattcttatccttcttgtattgaacactggttgattgatgataatagttaactttgctttg 19117544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55199678 - 55199880
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||  ||| ||    
T  55199678 tgctattgtttctagtattatttttcagtcatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagct 55199777  T
Q  101 aggttgacagtctattcttg-ggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata---gttaactttgctctg 196  Q
    |    | | | || |||||| | |||| ||| ||||||| |||||||||||||||||||| | || | ||||||||||||||   |||||||||||| ||    
T  55199778 a---cggcggcctgttcttgcgctagtgaccatattttttattcttatccttcttgtactgatcactagttgattaatgataatcgttaactttgctttg 55199874  T
Q  197 gtaaaa 202  Q
    ||||||    
T  55199875 gtaaaa 55199880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 3 - 202
Target Start/End: Complemental strand, 31341743 - 31341543
Alignment:
Q  3 ctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctag 102  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||| |||||||    |||| ||||||||||| |||  |||    
T  31341743 ctattgtttctaatattatttatcagttatctttacattccaacttcaaggtgaagtttattaggagacaaactgacatggttgctcataccttagttag 31341644  T
Q  103 gttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggt 198  Q
       | ||| |  |||||||| |||||||||||||||| ||||||||||||||| || | |||| |||||||||||||   ||||||||||||| | ||||    
T  31341643 ---ggcagccggttcttgggctagtcaccgtatttttgattcttatccttcttatattgaacattggttgattaatgataatagttaactttgttttggt 31341547  T
Q  199 aaaa 202  Q
    ||||    
T  31341546 aaaa 31341543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 2615653 - 2615828
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||| |||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||||  |||||| ||||||||||||||| |||||    
T  2615653 tattgtttttagtattatttatcagttatttttacattccaacctcgagatgaagtttgttaggagacaaacgaacatggttgctcatactttaactagg 2615752  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      |||   || |||||||| ||||||||||| |||| ||| | | | |||||||| | |||| ||||||||||||||||    
T  2615753 gcgac---ctgttcttgggctagtcaccgtaatttttattttaagcgttcttgtattgaacattggttgattaatgata 2615828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 55213492 - 55213694
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||| |||||||| ||||||| |||| ||| |||||| |||||| |||||||| ||    
T  55213492 tgctattgtttttggtattatatatcagttatctttacgttccaacttcgaggtgaaatttgttaggagaaaagcgaacatggttgcttatactttaact 55213591  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | | | |  |||||||| ||||||| |||||||| |||||||| |||||| || | |||| |||||||||||||   ||| ||||||||||| ||    
T  55213592 ag---ggcggccggttcttgggctagtcactgtattttttattcttattcttcttatattgaacattggttgattaatgataataattaactttgctttg 55213688  T
Q  197 gtaaaa 202  Q
    ||||||    
T  55213689 gtaaaa 55213694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 11020200 - 11020023
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||| | || ||||||||||||  |||||||| |||||| |||  ||||| |||| ||    
T  11020200 tgctattgtttctagtattatttatcaattatctttacatttcaacctcgatgtgaagtttgtttggagacaagcgaacatggttaatcatattttagct 11020101  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   ||||  |||| |||||| ||||||| |||||||| |||||||| ||||||||| | |||| |  |||||||||||||    
T  11020100 ag---gacaacctatccttgggctagtcactgtattttttattcttat-cttcttgtattgaacattaattgattaatgata 11020023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 647168 - 647094
Alignment:
Q  23 tatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||  |||||| |||||||||||||||    
T  647168 tatcagttatctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatacttta 647094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 24176938 - 24176999
Alignment:
Q  2 gctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgt 63  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  24176938 gctattgtatctagtattatttataagttatctttacattccaacttcgaggtgaagtttgt 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 46007466 - 46007568
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||| |||||||||||||||| ||||||||| || |||  ||| ||||||||||  ||||||  ||||||  |||||||||||||| ||    
T  46007466 tgctattgtttctagcattatttatcagttatttttacattctaattttagggtaaagtttgttagaagacaaatgaacatgattgctcatactttaact 46007565  T
Q  101 agg 103  Q
    |||    
T  46007566 agg 46007568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 48227566 - 48227713
Alignment:
Q  32 tctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctattcttggg-tagtcacc 130  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||  || || ||| ||||||||||| |||||  |||    | |||||||| || || ||    
T  48227566 tctttacattccaacttcgaggtgaaatttgttaggagacaagcaaatatggttcctcatactttagctagggcgac---ttgttcttgggttattcgcc 48227662  T
Q  131 gtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
     ||||||| ||| ||||| |||||||| | |||| ||||||||||||||||    
T  48227663 atattttttatttttatctttcttgtattgaacaatggttgattaatgata 48227713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 1702906 - 1702807
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||| ||| ||||||||||||  |||||||||||||||| |||||  |||||||||||||||  ||||||| ||| ||  || ||||||||||| |||||    
T  1702906 tattatttttagtattatttactagttatctttacattcgaacttcaaggtgaagtttgttagaagacaagcgaatatgattactcatactttaactagg 1702807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 49525181 - 49525125
Alignment:
Q  34 tttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctca 90  Q
    |||||||||||| |||||||| |||||||||| | |||||| |||||| | ||||||    
T  49525181 tttacattccaattttgaggtaaagtttgttaggcgacaagcgaacatggctgctca 49525125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 20205122 - 20205324
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  20205122 tgctattgtttctagtattatatatcagttatctttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 20205221  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | ||| |||||||||||  ||||| ||||||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||||| ||    
T  20205222 ag---ggcagcctattcttgggccagtcaacgtatttttgattcttatccttcttgtattgaacattggttgattaatgataatagttaactttgctttg 20205318  T
Q  197 gtaaaa 202  Q
    ||||||    
T  20205319 gtaaaa 20205324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41940757 - 41940554
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||  ||||| |||||||| ||    
T  41940757 tgctattgtttctagtattatttaccggttatctttacattccaacttcgaggtgaagtttgttaggagacaagagaacatgattgctaatactttagct 41940658  T
Q  101 aggttgacagtctattcttggg-tagtcaccgta-tttttcattcttatccttcttgtactcaacagtggttgattaatgata---gttaactttgctct 195  Q
    ||   ||| |  | || ||||| ||||||||||| ||||| ||||||||||||||| || | |||| ||||||||||||||||   |||||||||||| |    
T  41940657 ag---gactgcttgttattgggctagtcaccgtatttttttattcttatccttcttttattgaacattggttgattaatgatagttgttaactttgcttt 41940561  T
Q  196 ggtaaaa 202  Q
    |||||||    
T  41940560 ggtaaaa 41940554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 11375528 - 11375364
Alignment:
Q  15 gtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtcta 114  Q
    ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||| ||||   | | | ||     
T  11375528 gtattatttatgagttatctttacattccaactccgaggtgaagtttgttaagagacaagcgaacatagttgctcatactttagctag---ggcggcctg 11375432  T
Q  115 ttcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||||||| || ||||||||||||| ||| |||||||||||||| | |||| ||||||||||||||||    
T  11375431 ttcttgggctattcaccgtatttttaatttttatccttcttgtattgaacattggttgattaatgata 11375364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 25730978 - 25731153
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| |||| ||| |||||| ||||||||||||||| ||||     
T  25730978 tattgtttctagtattatttatcagttatatttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatactttagctag- 25731076  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      | | | || |||||||| ||||||| |||||||| |||||||||||||||||| | |||| || |||||||||||||    
T  25731077 --ggcggcctgttcttgggctagtcactgtattttttattcttatccttcttgtattgaacattgtttgattaatgata 25731153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 8388253 - 8388431
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||||||||  ||| ||    
T  8388253 tgctattgtttccagtattatttttcagttttctttacattccaacttcgaggggaagtttgttaggagacaagcgaacatggttgctcatagcttagct 8388352  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||| ||   || | |||||||| |||||||||||||||| ||||||||||||||| || | |||| ||||||||||||||||    
T  8388353 agggtg---gtttgttcttgggctagtcaccgtattttttattcttatccttcttatattaaacactggttgattaatgata 8388431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 27532926 - 27532758
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||| || |||||||| ||    
T  27532926 tgctattgtttcaagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttacttatactttagct 27532827  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttg 171  Q
    ||| |||||   | |||||||| || |||| |||||||| |||||||||||||| ||| | |||| ||||||    
T  27532826 agggtgaca---tgttcttgggctaatcactgtattttttattcttatccttctcgtattgaacaatggttg 27532758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 27292601 - 27292778
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  | ||||||||| | | |||||||| |||||| ||||||||||||||| ||    
T  27292601 tgctattgtttctagtattaattatcagttatctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatactttagct 27292700  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||  ||||   | |||||||| |||||||||||||||| ||||||||| |||||||| | |||| || |||||||||||||    
T  27292701 agg-ggaca---tgttcttgggctagtcaccgtattttttattcttatcattcttgtattgaacattgtttgattaatgata 27292778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 32632686 - 32632859
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggt 104  Q
    |||||||||| ||||||||||  ||||||||||||||| ||||| ||||||| |||| ||| |||||||| |||||||||||| ||||||||| |||||     
T  32632686 attgtttctaatattatttatttgttatctttacattctaacttcgaggtgacgtttattatgagacaagcgaacatagttgcccatactttagctagg- 32632784  T
Q  105 tgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
       | | || |||||||| |||||||||||||||| |||||||||||||||| | | |||| ||||||||||||||||    
T  32632785 ---cggcctgttcttgggctagtcaccgtattttttattcttatccttcttggattgaacattggttgattaatgata 32632859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4268266 - 4268368
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||  ||||||||||| ||| |||||||| |||||| ||||||||||||||||||    
T  4268266 tgctattgtttctagtattaattctcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatactttatct 4268365  T
Q  101 agg 103  Q
    |||    
T  4268366 agg 4268368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 23075002 - 23075134
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||| |||| |||||    
T  23075002 tattgtttatagtattatttatcagttatgtttacattccaactttaaggtgaagtttgttaggagacaagcgaacatggttgctcatagtttagctagg 23075101  T
Q  104 ttgacagtctattcttggg-tagtcaccgtattttt 138  Q
      ||||   | |||||||| ||||||||||||||||    
T  23075102 acgaca---tgttcttgggctagtcaccgtattttt 23075134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 15988766 - 15988673
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||   |||| |||||||||||||||    
T  15988766 tattgtttctagtattatttatcagttatctttacattacaacttcgaggtgaagtttgttaggagacaagcagacatggttgctcatacttta 15988673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 26597474 - 26597386
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcata 92  Q
    |||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||    
T  26597474 tattgtttctagtattatttttcaattatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 26597386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 22767269 - 22767115
Alignment:
Q  25 tcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctattcttggg-t 123  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||  |||||| ||||||||||||||| ||| |  | ||   | |||||||| |    
T  22767269 tcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagctaaggcggca---tgttcttgggct 22767173  T
Q  124 agtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||||||||||||||| |||||||| ||||||||  | |||| |||||||| |||||||    
T  22767172 agtcaccgtatttttaattcttattcttcttgtgttgaacattggttgatgaatgata 22767115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 30573697 - 30573519
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| ||||||||||||||||||||||||| |||  || ||||||||||| |||||||  ||||||| |||||| |||| ||||| |||| ||    
T  30573697 tgctattgtttttagtattatttatcagttatctttatattttaattttgaggtgaaatttgttagaagacaagcgaacatggttgttcatattttagct 30573598  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |    | | |||| || ||||| |||||||||||||||| ||||||||||||||| || | |||| || |||||||||||||    
T  30573597 a---aggcggtctgtttttgggttagtcaccgtattttttattcttatccttcttatattgaacattgattgattaatgata 30573519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 12660486 - 12660585
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||||||||||||||| |||||||| ||||||||| ||||| ||| |||||||||||| |||||||| ||||||   ||||||||||||| |||||    
T  12660486 tattgtttctagtattatttttcagttatgtttacattctaacttcgagctgaagtttgttaggagacaagcgaacatgactgctcatactttagctagg 12660585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 34652271 - 34652076
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctc--atactttatcta 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||     ||||||    ||||||| |||||| |||||||  |||||||| |||    
T  34652271 tattgtttctagtattatttatcaattatctttacattccaacttcgag-----gtttgt----agacaagcgaacatggttgctcatatactttaacta 34652181  T
Q  102 ggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctgg 197  Q
    || ||   |  |||||||||| |||||||||||||||| ||||||||| |||||||| | || | ||||||||||| |   |||||||  |||||| |||    
T  34652180 ggatg---gcttattcttgggttagtcaccgtattttttattcttatctttcttgtattgaatattggttgattaaggacaatagttacatttgctttgg 34652084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 30222858 - 30222764
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||||| ||| |||  |||||| |||||||||||||| |||||||| |||||||||||||||||||| |  |||||  ||||||||||||||    
T  30222858 tgctattgtttatagaatt--ttatcaattatctttacattctaactttgatgtgaagtttgttaagagacatgcaaacatgattgctcatacttta 30222764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31908416 - 31908352
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgtta 65  Q
    ||||||||||| || |||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  31908416 tgctattgtttataatattatttatcagttatcttcacatttcaactttgagatgaagtttgtta 31908352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 26076480 - 26076641
Alignment:
Q  34 tttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcata-ctttatctaggttgacagtctattcttggg-tagtcaccg 131  Q
    |||||||||||||||  ||||||||||||||| ||||||||  ||||| ||||||||||  ||||   ||| |   || || |||||||| || |||| |    
T  26076480 tttacattccaacttcaaggtgaagtttgttaggagacaagcaaacatggttgctcatatttttagtcagggt---agcctgttcttgggataatcactg 26076576  T
Q  132 tatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgct 193  Q
    ||||||| |||||||| ||||||||| | |||| |||||||||||||   |||||||||||||||    
T  26076577 tattttttattcttattcttcttgtattgaacattggttgattaatgataatagttaactttgct 26076641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 26597363 - 26597284
Alignment:
Q  126 tcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaa 202  Q
    ||||||||| ||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||| | ||||||||    
T  26597363 tcaccgtatatttgattcttatccttcttgtattgaacactggttgattaatgataatagttaactttgttttggtaaaa 26597284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 16732100 - 16732278
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  16732100 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 16732199  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| |||||||||||||||| |||||||||||| ||||| | |||| ||||||||||||||||    
T  16732200 ag---ggcggactgttcttgggctagtcaccgtattttttattcttatcctttttgtattgaacattggttgattaatgata 16732278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 17710234 - 17710412
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  17710234 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 17710333  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| |||||||||||||||| |||||||||||| ||||| | |||| ||||||||||||||||    
T  17710334 ag---ggcggactgttcttgggctagtcaccgtattttttattcttatcctttttgtattgaacattggttgattaatgata 17710412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 29200975 - 29200774
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||| ||||||||||||||| ||    
T  29200975 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct 29200876  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    |||  |   |||| |||||||| ||||||| |||||||| ||||||||| |||||||| | |||| |||||||||||||   ||||||||||||| | ||    
T  29200875 agggcg---gtctgttcttgggctagtcactgtattttttattcttatc-ttcttgtattgaacattggttgattaatgataatagttaactttgttttg 29200780  T
Q  197 gtaaaa 202  Q
    ||||||    
T  29200779 gtaaaa 29200774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 9328617 - 9328444
Alignment:
Q  6 ttgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| |||||| ||||||||||||||| |||        
T  9328617 ttgtttctagtattatttatcagttatctttacattccaacttcgatgtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta---c 9328521  T
Q  106 gacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||   ||||||||||| |||||||||||||||| ||| |||||||||||||| | |||| ||||||||||||||||    
T  9328520 gacgtcctattcttgggctagtcaccgtatttttaatttttatccttcttgtattgaacattggttgattaatgata 9328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 30824511 - 30824322
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||| ||||||||||| |||  ||||    
T  30824511 tattgtttctagtcttatttatcagttatctttacattccaactttgaagtgaagtttgttaggagataagcgaacatggttgctcataccttaattagg 30824412  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgat--agttaactttgctc 194  Q
    |     |||| |||||||| |||||||| ||||||| ||||||||| |||||||| | |||| |||||||||||||||  ||||||||||||||    
T  30824411 t----ggtctgttcttgggctagtcaccatattttttattcttatctttcttgtattgaacattggttgattaatgataaagttaactttgctc 30824322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 33224569 - 33224378
Alignment:
Q  12 ctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagt 111  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||  |||||||||  ||||||||   | |||     
T  33224569 ctagtattatttttcagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatgattgctcataacttatctag---ggcagc 33224473  T
Q  112 ctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaa 202  Q
    || |||||||| |||||||||||||||| ||||||||| |||||||| | |||| |||||||||||||   ||||||||||||||| ||||||||    
T  33224472 ctgttcttgggctagtcaccgtatttttgattcttatcattcttgtattgaacactggttgattaatgataatagttaactttgctttggtaaaa 33224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 3601819 - 3602021
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||| |||||||  |||||| |||||||||| |||| ||    
T  3601819 tgctattgtttctagtattatttatcagttatctttacattctaaattcgaggtgaagtttgttaggagacaatcgaacatggttgctcatagtttagct 3601918  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | | | || || ||||| | |||||||||||||| |||||||||||||||| | | |||| |||||||||||||   |||||||||||||||  |    
T  3601919 ag---ggcgggctgttgttgggcttgtcaccgtattttttattcttatccttcttgcattgaacattggttgattaatgataatagttaactttgcttgg 3602015  T
Q  197 gtaaaa 202  Q
    ||||||    
T  3602016 gtaaaa 3602021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 24251619 - 24251807
Alignment:
Q  14 agtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtct 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||||   | | | ||    
T  24251619 agtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctag---ggcggcct 24251715  T
Q  114 attcttg-ggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaata 204  Q
     |||||| | |||||||||||||||| |||||||||   |||||| | |||| |||||||||||||   ||||||||||||| | ||||||||||    
T  24251716 gttcttgagctagtcaccgtatttttaattcttatc---cttgtattgaacattggttgattaatgataatagttaactttgttttggtaaaata 24251807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 44481267 - 44481456
Alignment:
Q  14 agtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtct 113  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||||   | | | ||    
T  44481267 agtattatttaccagttatctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctag---ggcggcct 44481363  T
Q  114 attcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaa 202  Q
     |||||||| |||||||| ||||||| |||||||||| ||||||| | ||||  ||||||||||||   ||||||||||||||| ||||||||    
T  44481364 gttcttgggctagtcaccatattttttattcttatccatcttgtattgaacatgggttgattaatgataatagttaactttgctttggtaaaa 44481456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 3275201 - 3275380
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcata-ctttatc 99  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| ||||| ||| | |    
T  3275201 tgctattgtttttagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatggttgatcatagcttaagc 3275300  T
Q  100 taggttgacagtctattctt-gggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||   | | | || ||||| || |||||||||||||||| ||| ||||||||||| || | ||||||| |||||||||||||    
T  3275301 tag---ggcggcctgttcttaggctagtcaccgtatttttaatttttatccttcttatattaaacagtgtttgattaatgata 3275380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 17877565 - 17877758
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||| || ||| |||||||||||||||  |    
T  17877565 tgctattgtttctagtattatttatcagttatctttacatttcaatttcgaggtgaagtttgttatgagacaagcgaccatggttgctcatactttaggt 17877664  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgct 193  Q
    ||   ||| |  | || ||||| |||||||||||||||| ||| |||||||||||||| | |||| || || |||||||   |||||||||||||||    
T  17877665 ag---gacggcatgttattgggctagtcaccgtattttttatttttatccttcttgtattgaacattgattaattaatgataatagttaactttgct 17877758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 47580042 - 47580219
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||||| |||||| ||||||||| ||| |  |    
T  47580042 tgctattggatctagtattatttatcagttatctttatattccaacttcgaggtgaagtttggtaggagacaagcgaacatggttgctcattcttcagtt 47580141  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |    ||| | || |||||||| |||||||||||||||| ||||| |||||||||||| | |||| ||||||||||||||||    
T  47580142 a---agacggcctgttcttgggctagtcaccgtattttt-attctcatccttcttgtattgaacattggttgattaatgata 47580219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 16098660 - 16098838
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||| |||||||| |||||| |||||||||| |||| ||||     
T  16098660 tattgtttctagtattagttatcagttatctttacattccaacttcaaggtgaagtttgttatgagacaagcgaacatggttgctcatattttagctag- 16098758  T
Q  104 ttgacagtctattcttg-ggtagtcaccgta---tttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      | | | || ||| || | |||||||||||   ||||| ||| |||||||||||||| | |||| ||||||||||||||||    
T  16098759 --ggcggcctgttcatgagctagtcaccgtatttttttttattattatccttcttgtattgaacattggttgattaatgata 16098838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 22289408 - 22289499
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcata 92  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||| ||||||||||    
T  22289408 tgctattgtttctagtattatttttcagttatctttacattccaacttcgaggtgatgtttgttaggagacaagcgaacatggttgctcata 22289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30493630 - 30493476
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||    ||||||||||||| |||||||   ||||| |||| |||||||||| ||    
T  30493630 tgctattgtttatagtattatttatcagttatctttacatttcaacttcatagtgaagtttgttaggagacaaccaaacatggttgttcatactttagct 30493531  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgta 157  Q
    |||  |   |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  30493530 agggcg---gtctgttcttgggctagtcaccgtattttttattcttatccttcttgta 30493476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 1581787 - 1581962
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacat-agttgctcatactttatctagg 103  Q
    ||||||| || |||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||| ||||||  | |||||||| |||| ||| |    
T  1581787 attgtttataatattatttatcagttatctttacatttcaacttcgatgtgaagtttgttaggagacaagcgaacatggggtgctcatagtttagctaag 1581886  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      |   |  |||| ||||| |||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  1581887 gag---gcttatttttgggctagtcaccgtattttttattcttatccttcttgtattgaacattggttgattaatgata 1581962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 181
Target Start/End: Original strand, 24139228 - 24139356
Alignment:
Q  51 aggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctattcttggg-tagtcaccgtatttttcattcttatcc 149  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||| |||||  | |   || |||||||| ||||||||| |||||| ||||||||||    
T  24139228 aggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctagggcggc---ctgttcttgggctagtcaccgcattttttattcttatcc 24139324  T
Q  150 ttcttgtactcaacagtggttgattaatgata 181  Q
    |||||||| | |||| ||||||||||||||||    
T  24139325 ttcttgtattgaacattggttgattaatgata 24139356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 35030643 - 35030573
Alignment:
Q  32 tctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctag 102  Q
    |||||||||||||||||||||||||||||||  |||||||||| ||||||| |||||||||||||| ||||    
T  35030643 tctttacattccaactttgaggtgaagtttgcgaagagacaagcgaacataattgctcatactttagctag 35030573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 6216488 - 6216562
Alignment:
Q  29 ttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||| |||||||||||||||||||||||||| ||    |||||| ||||||| |||||||  |||||||||||    
T  6216488 ttatctatacattccaactttgaggtgaagtttatttgtcgacaagcgaacatacttgctcactctttatctagg 6216562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 37245872 - 37245685
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||  |||||| ||||||||||||||| ||    
T  37245872 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatactttagct 37245773  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgatagttaacttt 190  Q
    |||  |   |||| |||||||| ||||||||| |||||| | |||||||||||||||| |  ||| | |||||||||||||||||||||||    
T  37245772 agggcg---gtctgttcttgggctagtcaccgcatttttaactcttatccttcttgtattgcacattagttgattaatgatagttaacttt 37245685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 32577064 - 32576890
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggt 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||||      
T  32577064 attgtttatagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctag-- 32576967  T
Q  105 tgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
     | ||| || |||||||| ||||||| ||||||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  32576966 -ggcagcctgttcttgggctagtcactgtatttttgtttcttatccttcttgtattgaacattggttgattaatgata 32576890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 28426354 - 28426552
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||||||||||||| ||| |     
T  28426354 attgtttctagtattatttatcagttatctttacattccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatactttagctaagg 28426453  T
Q  105 tgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaa 200  Q
    ||   | ||  ||||||| ||||||| |||||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||| | ||||||    
T  28426454 tg---gcctgctcttgggctagtcactgtatttttaattcttatccttcttgtattaaacattggttgattaatgataatagttaactttgttttggtaa 28426550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 49119416 - 49119218
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||| |||||| ||||||||||||||| ||| |     
T  49119416 attgtttctagtattatttatcagttatctttacattccaacttcgaggagaagtttgttaggagacaagcgaacatggttgctcatactttagctaagg 49119317  T
Q  105 tgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaa 200  Q
    ||   | ||  ||||||| ||||||| |||||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||| | ||||||    
T  49119316 tg---gcctgctcttgggctagtcactgtatttttaattcttatccttcttgtattaaacattggttgattaatgataatagttaactttgttttggtaa 49119220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2065020 - 2065198
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| |||||||  |||||| ||||||||||||||| ||    
T  2065020 tgctattgtttctagtattatttatcagttatctttacatttcaacttcaaggtgaagtttgttaggagacaaacgaacatggttgctcatactttagct 2065119  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||| |   ||  | |||||||| |||||||||||||||| |||||||||||||||||| | |||| ||||||||| ||||||    
T  2065120 agggt---agcatgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacattggttgattgatgata 2065198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 49951480 - 49951658
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  49951480 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 49951579  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| ||||||  |||||||| |||||||||||| ||||| | |||| | ||||||||||||||    
T  49951580 ag---ggcggcctgttcttgggctagtcattgtattttttattcttatccttattgtattgaacattagttgattaatgata 49951658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 51259546 - 51259347
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||  ||| ||||     
T  51259546 tattgtttctagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatagcttagctag- 51259448  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggta 199  Q
      | | | ||||| ||||| |||||||||||||||| ||| |||||||| ||||| | || | |||||||||||||   ||||||||||||||| |||||    
T  51259447 --ggcggcctatttttgggctagtcaccgtattttttattattatcctttttgtattgaaaactggttgattaatgataatagttaactttgctttggta 51259350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 26422618 - 26422444
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggt 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    ||||| ||||||||||||||| |||       
T  26422618 attgtttttagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacagacaaacatggttgctcatactttaacta--- 26422522  T
Q  105 tgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
     | | | ||||||||||| |||||||||||||||| |||||||| ||||||||| | |||| ||||||||||||||||    
T  26422521 cggcggcctattcttgggctagtcaccgtatttttaattcttattcttcttgtattgaacattggttgattaatgata 26422444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 21321712 - 21321875
Alignment:
Q  16 tattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctat 115  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||| || ||| ||||||||||||||| ||||   | | | || |    
T  21321712 tattatttatcagttagctttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttgctcatactttagctag---ggcggcctgt 21321808  T
Q  116 tcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||||||| |||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  21321809 tcttgggctagtcaccgtattttttattcttatccttcttgtattgaacattggttgattaatgata 21321875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 51734989 - 51734814
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |||||| |||||| ||||||||||||||| ||||     
T  51734989 tattgtttctagtattatttatctgttatctttacattccaacttcgaggtgaagtttgttaggtgacaagtgaacatggttgctcatactttagctag- 51734891  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      | | | || |||||||| || | ||||||| ||| |||||||||||| ||||| | |||| ||||||||||||||||    
T  51734890 --ggcggcctgttcttgggctaattaccgtatctttgattcttatcctttttgtattgaacattggttgattaatgata 51734814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 44936099 - 44935924
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| |||||| |||||||||| |||| |||      
T  44936099 tattgtttctattattatttatcagttatctttacattccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcatagtttagcta-- 44936002  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
     |||| |  | |||||||| ||||||||||||||||  || |||||||||||||| | || | || |||||||||||||    
T  44936001 -tgacggcatgttcttgggttagtcaccgtattttttttttttatccttcttgtattgaatattgattgattaatgata 44935924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 18442167 - 18441989
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||| |||||||  ||| || |||||||||| |||| ||    
T  18442167 tgctattgtttctagtattatttatcagttatctttatattccaacttcaaggtgaagtttgttatgagacaaacgaaaatggttgctcatattttagct 18442068  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| |||||||||||||||| ||| |||||||||||||| | |||| ||||| |||| |||||    
T  18442067 ag---ggcggcctgttcttgggctagtcaccgtatttttaatttttatccttcttgtattgaacattggttcattattgata 18441989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 56065800 - 56065978
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||||||  ||| ||    
T  56065800 tgctattgtttctaatattatttttcagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatagcttagct 56065899  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | ||||  ||||| |||||||||||||||| |||||||| ||||||||| | |||| || |||||||||||||    
T  56065900 ag---ggcggcctatatttgggctagtcaccgtattttttattcttattcttcttgtattaaacactgattgattaatgata 56065978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 24989948 - 24989776
Alignment:
Q  7 tgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttg 106  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||  |||||| |||||||||||||| ||    
T  24989948 tgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaagagacaaacgaacacggttgcttatactttatctagggtg 24989849  T
Q  107 acagtctattcttg-ggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |   | | || ||| | || |||||||| |||| |||||||| ||| ||||| | |||| || |||||||||||||    
T  24989848 a---tatgtttttgagctaatcaccgtactttttattcttattctttttgtattgaacattgattgattaatgata 24989776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 181
Target Start/End: Complemental strand, 8754481 - 8754305
Alignment:
Q  3 ctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctag 102  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||| |||||||  |||    
T  8754481 ctattgtttttagtattatttatcaattatctttacattccaacttcgagatgaagtttgttatgagacaagcgaacatggttgctcgtactttagatag 8754382  T
Q  103 gttgacagtctattc-ttgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
         | |||| ||| |||| |||||||||||||||| ||||||||  |||||||| |||||| |  |||||||||||||    
T  8754381 ---agcggtctgttctttggatagtcaccgtattttttattcttatttttcttgtattcaacattatttgattaatgata 8754305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 23095401 - 23095580
Alignment:
Q  21 tttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctattcttg 120  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||  || |||||| |||| ||||| ||   | || ||||||    
T  23095401 tttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattactcatattttagctagggtg---gcctgttcttg 23095497  T
Q  121 gg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgatagttaactttgctctggtaaaa 202  Q
    || ||||||||| |||||| ||||||||| || ||||| |  ||| | ||||||||||||||| |||||||| | ||||||||    
T  23095498 ggctagtcaccgcatttttaattcttatcatttttgtattgcacattagttgattaatgatagataactttgttttggtaaaa 23095580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 41835331 - 41835154
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |||||||| |||||| ||| |||||| ||||  |    
T  41835331 tgctattgtttctagtattatttatcagttatctttacattccaatttcgagatgaagtttgttaggagacaagcgaacatggttcctcatagtttagat 41835232  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| |||||||  ||||||| ||||||||| |||||||| |  ||| ||||||||||||||||    
T  41835231 ag---ggcggcctgttcttgggctagtcactatattttttattcttatctttcttgta-ttgacattggttgattaatgata 41835154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 29655683 - 29655484
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||||||||||| |||||||||||| | |||| ||| |||||||||||| |||||||| |||||| ||||||||||||||| |||||    
T  29655683 tattgtttctagtattatttatcagctatctttacatttccacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatactttagctagg 29655584  T
Q  104 ttgacagtctattc-ttgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgat---taatgatagttaactttgctctggta 199  Q
      |||   || ||| |||| || |||||| |||||| ||||||||| ||||| || | |||| || |||||   |||| |||||||||| |||| |||||    
T  29655583 gcgac---ctgttctttggctaatcaccgcattttttattcttatcattcttttattgaacattgattgattaataataatagttaactctgctttggta 29655487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 28537807 - 28537716
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcata 92  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||  ||||||| |||||| ||||||||||    
T  28537807 tgctattgtttctagtattattaatcagttatcattacattccaacttcgaggtgaagtttggtagaagacaagcgaacatggttgctcata 28537716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 6754027 - 6753937
Alignment:
Q  115 ttcttgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaa 202  Q
    ||||||| |||||||||||||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||||| ||||||||    
T  6754027 ttcttggctagtcaccgtattttttattcttatccttcttgtattgaacattggttgattaatgataatagttaactttgctttggtaaaa 6753937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 55735176 - 55735248
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaa 73  Q
    |||||||||||||||||||||| |||||||||||| ||||| |||||| |||||||||||||||| |||||||    
T  55735176 tgctattgtttctagtattattgatcagttatcttaacatttcaacttcgaggtgaagtttgttaggagacaa 55735248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 47226350 - 47226174
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||  ||||| | ||||||  |||||  ||||| |||   || ||    
T  47226350 tgctattgtttctagtattatttatcaattatctttacattccaacttcaaagtgaagaatgttaggcgacaagcaaacatgattgcttata--gtaact 47226253  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||  ||||   | |||||||| || ||||||||||||| ||||||||| || ||||| | |||| ||||||||||||||||    
T  47226252 agggcgaca---ttttcttgggctaatcaccgtattttttattcttatcttttttgtattgaacattggttgattaatgata 47226174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 10575349 - 10575267
Alignment:
Q  123 tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaa 202  Q
    |||||||| ||||||| |||||||||||||||||| | |||| ||||| |||||||   ||||||||||||||| ||||||||    
T  10575349 tagtcaccatatttttgattcttatccttcttgtattgaacattggttaattaatgataatagttaactttgctttggtaaaa 10575267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 40727169 - 40727222
Alignment:
Q  40 ttccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatac 93  Q
    |||||||||||||||||||||||||| | | |||| || |||||||||||||||    
T  40727169 ttccaactttgaggtgaagtttgttaggcgtcaagcgagcatagttgctcatac 40727222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 55735305 - 55735360
Alignment:
Q  126 tcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||||| ||||||| ||||| |||||||||||| | |||| ||||||||||||||||    
T  55735305 tcaccatatttttaattctcatccttcttgtattgaacattggttgattaatgata 55735360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 7462677 - 7462612
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagag 69  Q
    ||||| |||| ||||||||  | ||||||||||||||| ||| ||||| ||||||||| |||||||    
T  7462677 tattgattcttgtattattgtttagttatctttacatttcaattttgaagtgaagtttattaagag 7462612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 54455555 - 54455527
Alignment:
Q  29 ttatctttacattccaactttgaggtgaa 57  Q
    |||||||||||||||||||||||||||||    
T  54455555 ttatctttacattccaactttgaggtgaa 54455527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 9710126 - 9710300
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| |||       
T  9710126 attgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagcta--- 9710222  T
Q  105 tgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
     ||| |||| |||||||| |||| |||||||||||  ||||||||||||||||| | |||| ||||||||||||||||    
T  9710223 agacggtctgttcttgggctagtaaccgtatttttagttcttatccttcttgtattgaacattggttgattaatgata 9710300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 12130658 - 12130456
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  12130658 tgctattatttctagtattatttatcagttatatttacattccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgctcatactttagct 12130559  T
Q  101 aggttgacagtctattcttg-ggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   ||  | ||||||||| | |||| ||||||||||| |||||||||||||||||| | |||| |||||||||||||   |||||||||||||||  |    
T  12130558 ag---gagggcctattcttgagctagttaccgtattttttattcttatccttcttgtattgaacattggttgattaatgataatagttaactttgcttcg 12130462  T
Q  197 gtaaaa 202  Q
    ||||||    
T  12130461 gtaaaa 12130456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34695924 - 34695726
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  34695924 tgctattgtttctagtataatttaccagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 34695825  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | | |  | |||||||| | ||||||| |||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||||| ||    
T  34695824 ag---ggcggcttgttcttgggcttgtcaccgcattttttattcttatccttcttgtattgaacattggttgattaatgataatagttaactttgctttg 34695728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 34718336 - 34718138
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  34718336 tgctattgtttctagtataatttaccagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 34718237  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    ||   | | |  | |||||||| | ||||||| |||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||||| ||    
T  34718236 ag---ggcggcttgttcttgggcttgtcaccgcattttttattcttatccttcttgtattgaacattggttgattaatgataatagttaactttgctttg 34718140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 88726 - 88904
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||  | ||||||||| ||  |||||||| |||||| ||||||||||||||| ||    
T  88726 tgctattgtttccagtattatttatcagttagctttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatactttagct 88825  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| |||||||||||||||| |||||||||||||||||| | | || ||||||||||||||||    
T  88826 ag---ggcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgagcattggttgattaatgata 88904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 25552312 - 25552490
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||| |||||| ||||||||||||||||| |||||||| ||| ||| || |||| |||||||||||||||| |||||| |||||||||||||||  |    
T  25552312 tgctattatttctaatattatttatcagttatttttacatttcaattttaagatgaaatttgttaagagacaagtgaacatggttgctcatactttagtt 25552411  T
Q  101 aggttgacagtctattctt-gggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||  |||   || ||||| || |||||||||||||||| ||||||||||||||| || | |||| ||||||||||||||||    
T  25552412 aggaagac---ctgttcttaggttagtcaccgtattttttattcttatccttcttatattgaacattggttgattaatgata 25552490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 26198849 - 26199027
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |  ||||| |||||| ||| ||||||||||| ||    
T  26198849 tgctattgtttctagtattatttaccagttatctttacatttcaactttgaggtgaagtttgttaggtaacaagtgaacatggtttctcatactttagct 26198948  T
Q  101 aggttgacagtctattcttg-ggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||| ||||    | |||||| | ||||||||| |||||| ||||||||| ||| | || | |||| || |||||||||||||    
T  26198949 agggtgac---ttcttcttgagctagtcaccgcattttttattcttatcattcatatattgaacattgattgattaatgata 26199027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 13109888 - 13109721
Alignment:
Q  2 gctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatcta 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||  ||||||||||| |||||||||| |||    
T  13109888 gctattgtttccagtattatttatcagttatctttacattccaacgttgaggtgaagtttgtcaggagacaaacgaacatagttgttcatactttagcta 13109789  T
Q  102 ggttgacagtctattcttgg-gtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgatt 174  Q
    ||  ||||      | ||||  |||||||||||||||| | |||||||||||||||| | |||| || ||||||    
T  13109788 gggcgaca------tgttggtttagtcaccgtattttttactcttatccttcttgtattgaacattgtttgatt 13109721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 14827247 - 14827448
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||| ||| || |||||| ||| |||||||||||||||||||||| ||||| ||||| ||||||| ||||  |||||| ||||||||||||||||||    
T  14827247 tgctattatttataatattatgtattagttatctttacattccaacttcgaggtaaagttagttaaga-acaaacgaacatggttgctcatactttatct 14827345  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatga---tagttaactttgctctg 196  Q
    |||  ||||   |||||||||| ||||||||| |||||  |||||||| ||||||||| | |||| | ||||||||||||   |||||||||||||| |     
T  14827346 agggcgaca---tattcttgggctagtcaccgcattttctattcttattcttcttgtattgaacattagttgattaatgatattagttaactttgcttta 14827442  T
Q  197 gtaaaa 202  Q
    ||||||    
T  14827443 gtaaaa 14827448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 11292080 - 11291907
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||| |||||||||||||||||||||| |||||| ||||||  ||||||||||||||| ||||| || ||||||  |||||||||||||| |||||    
T  11292080 tattgtttatagtattatttatcagttatctatacatt-caacttcaaggtgaagtttgttaggagacgagcgaacatgtttgctcatactttagctagg 11291982  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |   | |  | |||||||| |||||||||||||||| ||||||||||||| |||| | |||| ||||||||||||||||    
T  11291981 t---cggcttgttcttgggctagtcaccgtattttttattcttatccttcctgta-ttaacattggttgattaatgata 11291907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 1418001 - 1417917
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagtt 85  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||| || |||||||    
T  1418001 tgctattgtttctagtattatttatcaattatctttacattccaacttcgaggtgaagtttgttaggagacaagcgatcatagtt 1417917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 18344311 - 18344212
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||| |||| ||| |||||| ||||||||||||||| |||||    
T  18344311 tattgtttctagtattaattatcagttatctttacattccaacttcaaggtgaaatttgttaggagataagcgaacatggttgctcatactttagctagg 18344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 35158865 - 35158684
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgagg--tgaagtttgttaagagacaagagaacatagttgctcatactttat 98  Q
    |||||||||||||| |||||||||||| |||| |||||||||||||||  |||  |||||||||||| |||||||| ||||||||||||||||| |||      
T  35158865 tgctattgtttctattattatttatcaattatttttacattccaacttcaaggcatgaagtttgttatgagacaagcgaacatagttgctcatagtttcg 35158766  T
Q  99 ctaggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtgg-ttgattaatgata 181  Q
    ||||   | | | || |||||||| ||| |||||||||||| |||||||| ||| || || | |||| ||| |||||||||||||    
T  35158765 ctag---ggcggcctgttcttgggctaggcaccgtattttttattcttatgctttttatattgaacattggtttgattaatgata 35158684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 44017334 - 44017236
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||| |||||||||||||||||||||| ||||| ||||| ||  |||||| ||||| ||||||||  ||||||||||||||||||||| |||||    
T  44017334 attgtttcttgtattatttatcagttatcttttcattctaacttcgatatgaagtgtgttaggagacaagtaaacatagttgctcatactttaactagg 44017236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 10244580 - 10244494
Alignment:
Q  11 tctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||||||| | ||||| ||||| |||||||||| |||||||||||| ||||| | |||| ||||||  ||||||||||||||    
T  10244580 tctagtattatttctgagttagctttagattccaacttcgaggtgaagtttattaagcggcaagtgaacatgattgctcatacttta 10244494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 36445534 - 36445443
Alignment:
Q  6 ttgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||  |||||||| ||| || ||||||||||||||||| |||||||||||| ||||   ||||  |||||||||||||||| |||||    
T  36445534 ttgtttctcatattatttttcaattctctttacattccaacttcgaggtgaagtttattaaacaacaaacgaacatagttgctcattcttta 36445443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 1417900 - 1417832
Alignment:
Q  115 ttcttggg-tagtcaccgtatttttc-attcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||||||| ||||||||||||||||  |||||||||||||||||| | |||| || |||||||||||||    
T  1417900 ttcttgggctagtcaccgtatttttttattcttatccttcttgtattgaacattgattgattaatgata 1417832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 5609506 - 5609684
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||||||| ||| ||    
T  5609506 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatacattagct 5609605  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||  | ||   | |||||||| ||||||| |||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  5609606 agggcggca---tgttcttgggctagtcactgtattttttattcttatccttcttgtattgaacattggttgattaatgata 5609684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 202
Target Start/End: Original strand, 4395327 - 4395527
Alignment:
Q  3 ctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctag 102  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| ||||    
T  4395327 ctattgtttatagtattatttatcagttatctttacatttcaactttgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagctag 4395426  T
Q  103 gttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgatta---atgatagttaactttgctctggt 198  Q
       | | | || |||||||| |||||||||||||||| |||||||||||||||||| | |||| | ||||||||   || |||||||| |||||| ||||    
T  4395427 ---ggcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacattagttgattaacgataatagttaaatttgctttggt 4395523  T
Q  199 aaaa 202  Q
    ||||    
T  4395524 aaaa 4395527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 181
Target Start/End: Complemental strand, 16816816 - 16816639
Alignment:
Q  2 gctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatcta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||  ||    
T  16816816 gctattgtttctagtattatttatcagttatctttacattccaactttaaggtgaagtttgttaggagagaagagaacatggttgctcatactttagtta 16816717  T
Q  102 ggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||  |||    |||||||||| |||||||||||||||| || ||||||| ||| ||| | |||| ||||||||||||||||    
T  16816716 gggcgac---ttattcttgggctagtcaccgtattttttatccttatccatctcgtattgaacattggttgattaatgata 16816639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 48949744 - 48949546
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||| ||||||  ||| ||    
T  48949744 tgctattgtttctagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttactcatagcttagct 48949645  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgatta---atgatagttaactttgctctg 196  Q
    ||   | ||| || |||||||| |||||||||||||||| |||||||||||||||||| | |||| ||||||||||   || ||||||||||||||| ||    
T  48949644 ag---ggcagcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacactggttgattaaagataatagttaactttgctttg 48949548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 51113482 - 51113684
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| |||| ||| |||||| ||||||||||  ||| ||    
T  51113482 tgctattgtttctagtattatttttcagttatcttaacattccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcatagcttagct 51113581  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    |||  |||   || |||||||| |||||||||||||||| |||||||| ||||||||| | || | |||||||||||||   ||||||||||||| | ||    
T  51113582 agggcgac---ctgttcttgggttagtcaccgtattttttattcttattcttcttgtattgaatactggttgattaatgataatagttaactttgttttg 51113678  T
Q  197 gtaaaa 202  Q
    ||||||    
T  51113679 gtaaaa 51113684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 44602919 - 44603116
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||| || |||||||||     |    
T  44602919 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggggacaagcgaacatggtggctcatact-----t 44603013  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgatagt---taactttgctctg 196  Q
    ||   | | | || |||||||| |||||||| ||||||| ||||||||||||||| || | |||| |||||||||||||||| |   |||||||||| ||    
T  44603014 ag---ggcggcctgttcttgggctagtcaccatattttttattcttatccttcttatattgaacattggttgattaatgataataactaactttgctttg 44603110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 4 - 181
Target Start/End: Original strand, 36733866 - 36734035
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||       ||||||||| ||||     
T  36733866 tattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttacgagacaagcgaacat------gcatactttagctag- 36733958  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      | | | || |||||||| |||||| ||||||||| |||||||||||||||||| | || | ||||||||||||||||    
T  36733959 --ggcggcctgttcttgggctagtcatcgtatttttaattcttatccttcttgtattgaatattggttgattaatgata 36734035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 2885390 - 2885572
Alignment:
Q  1 tgctattgtttctagtattatttatcag----ttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttt 96  Q
    ||||||||||||||||||||||||||||    ||||||||||||| |||||| | |||||||||||||| || ||||| |||||| ||||||||||||||    
T  2885390 tgctattgtttctagtattatttatcagttaattatctttacatttcaacttcgtggtgaagtttgttaggatacaagcgaacat-gttgctcatacttt 2885488  T
Q  97 atctaggttgacagtctattcttggg-tagtcaccgta-tttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    | |||||  |||   || |||||||| ||||||||||| ||||| ||||||||| |||||||| | |||| ||||||||||||||||    
T  2885489 agctagggcgac---ctgttcttgggctagtcaccgtatttttttattcttatcattcttgtattgaacattggttgattaatgata 2885572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 25682820 - 25682996
Alignment:
Q  3 ctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctag 102  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||  ||||||||||||||| |||||||| || ||| ||||||||||||||| ||||    
T  25682820 ctattgtttctagtattatttttcagttatctttacattctaacttcaaggtgaagtttgttaggagacaagcgagcatggttgctcatactttagctag 25682919  T
Q  103 gttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |  | ||   | |||||||| ||||||||||| |||| |||| |||| ||||| || | |||| | ||||||||||||||    
T  25682920 ggaggca---tgttcttgggttagtcaccgtacttttaattcctatctttcttatattgaacatttgttgattaatgata 25682996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 44527420 - 44527599
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||  ||||||||||| ||| |||||||| |||||| | ||||||||||||| ||    
T  44527420 tgctattgtttctagtattaattattagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatactttaact 44527519  T
Q  101 aggttgacagtctattcttggg-tagtcaccgta-tttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| || |||||||| ||||| ||| |||||||| ||||| | |||| || |||||||||||||    
T  44527520 ag---ggcggcctgttcttgggttaatcaccgtatttttttattattatcctttttgtattgaacattgcttgattaatgata 44527599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 24538655 - 24538749
Alignment:
Q  2 gctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttt 96  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| || ||||| ||||||  |||||||||||||    
T  24538655 gctattatttctagtattatttatctgttatctttacattctaactttgaggtgaagttcgttaggaaacaagcgaacatgattgctcatacttt 24538749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 52109623 - 52109768
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||  |||| |||||||||| |||||||   |||||||||| ||||||||||  ||||    
T  52109623 tattgtttctagtattagttatcagttatctttacattctaacttcaaggtaaagtttgttatgagacaaacaaacatagttgttcatactttagatagg 52109722  T
Q  104 ttgacagtctattcttgg-gtagtcaccgtatttttcattcttatcctt 151  Q
      ||||   | |||||||  |||||||||||||||| ||||||||||||    
T  52109723 gcgaca---tgttcttggactagtcaccgtatttttaattcttatcctt 52109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 14485183 - 14485279
Alignment:
Q  7 tgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||  ||| |||||||  |||||||||||||||||||||| |||||    
T  14485183 tgtttttagtattgtttatcagttatttttacattccaactttaaggtgaagttcattaggagacaaacgaacatagttgctcatactttagctagg 14485279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 21031323 - 21031488
Alignment:
Q  8 gtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttga 107  Q
    |||||||||||||||||||| |||||||||||| | ||||| |||||||||||| ||| |||||||| ||||||  ||||||||| |||| | ||   |     
T  21031323 gtttctagtattatttatcaattatctttacatcctaacttcgaggtgaagttttttaggagacaagcgaacatgattgctcatagtttagccag---gg 21031419  T
Q  108 cagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgatta 175  Q
    ||| || || ||||| |||| ||||||| ||| |||||||||||||| ||| | |||| ||||||||||    
T  21031420 cagcctgtttttgggttagttaccgtatgttttattcttatccttctcgtattgaacattggttgatta 21031488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 48166412 - 48166568
Alignment:
Q  19 tatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctattct 118  Q
    |||||||| |||||||||||||| ||||||  || |||||||||||| || ||||  ||||||  |||||| ||||||| ||||     | | ||| |||    
T  48166412 tatttatctgttatctttacatttcaacttcaagatgaagtttgttaggaaacaaacgaacatgattgctcgtactttaactag---agcggcctactct 48166508  T
Q  119 tggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaat 177  Q
    |||| |||||||||||| ||| ||| |||||||||||||| | || | ||||||||||||    
T  48166509 tgggctagtcaccgtatctttgatttttatccttcttgtattgaatattggttgattaat 48166568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 5594267 - 5594379
Alignment:
Q  67 gagacaagagaacatagttgctcatactttatctaggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacag 165  Q
    |||||||| |||||| ||||||||||||||| |||||  | ||   | |||||||  || ||||||||||||| |||||||||||||||||| | || |     
T  5594267 gagacaagcgaacatggttgctcatactttaactaggacggca---tgttcttggactaatcaccgtattttttattcttatccttcttgtattaaatat 5594363  T
Q  166 tggttgattaatgata 181  Q
    || |||||||||||||    
T  5594364 tgattgattaatgata 5594379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 38679113 - 38679056
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagttt 61  Q
    ||||||||||| |||||||||| || || ||||||||||||||||  |||||||||||    
T  38679113 tattgtttctaatattatttataaggtagctttacattccaacttcaaggtgaagttt 38679056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 4898619 - 4898544
Alignment:
Q  22 ttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||| |||||||||| |||||| || || |||||||||| |||||||  ||| ||  ||||||||||||||    
T  4898619 ttatcagttgtctttacatttcaacttcgatgtaaagtttgttaggagacaaacgaatatgattgctcatacttta 4898544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 17371647 - 17371717
Alignment:
Q  33 ctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||||||||  ||||||||||| ||| |||||||| ||| || || |||||||| ||| |||||    
T  17371647 ctttacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcataccttagctagg 17371717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 3297083 - 3297042
Alignment:
Q  140 attcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||||||||||||||||| | |||| ||||||||||||||||    
T  3297083 attcttatccttcttgtattgaacattggttgattaatgata 3297042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 23163357 - 23163414
Alignment:
Q  40 ttccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||| ||| | ||||||||||  ||||||| |||||| |||||||||||||||    
T  23163357 ttccaacttcgagataaagtttgttagaagacaagcgaacatggttgctcatacttta 23163414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 13415190 - 13415368
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||  |||||||||||| || |||||||| |||||| ||||||||||||||| ||    
T  13415190 tgctattgtttttagtattatttatcaattatctttacattccaacttcaaggtgaagtttgctaggagacaagcgaacatggttgctcatactttagct 13415289  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||  |   |||| |||||||| |||||||||||||||| ||| |||||||||||||| | |||| ||||||||||||||||    
T  13415290 agggcg---gtctgttcttgggctagtcaccgtattttttatttttatccttcttgtattgaacattggttgattaatgata 13415368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 478073 - 477898
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||| |||||| ||||||||||| ||| |||||    
T  478073 tattgtttctaatattatttatcagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcataccttagctagg 477974  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
      | |   || |||||||| || ||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  477973 gcgtc---ctgttcttgggctaatcaccgtattttttattcttatccttcttgtattgaacattggttgattaatgata 477898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 33642781 - 33642610
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||| |||||| |||| |||||||||| |||||    
T  33642781 tattgtttctagtattatttatcagttatctttacattccaacttcaaggcgaagtttgttaggagacaagcgaacatggttgttcatactttagctagg 33642682  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaat 177  Q
     ||   |||| |||||||| |||||||||||||||| ||||||||| |||||||| | |||| | ||||||||||    
T  33642681 gtg---gtctgttcttgggctagtcaccgtattttttattcttatcattcttgtattgaacattagttgattaat 33642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40588750 - 40588572
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||  |||| ||||||||| ||    
T  40588750 tgctattgtttatagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatactttagct 40588651  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | || |||||||| |||||||||||||||| ||| |||||||||||||| | |||| | ||||||||||||||    
T  40588650 ag---ggcggcctgttcttgggctagtcaccgtattttttatttttatccttcttgtattgaacattagttgattaatgata 40588572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 598257 - 598055
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||| ||||||| |||||||| |||||| ||||||||||||||| ||    
T  598257 tgctattgtttctagtattatttattagttatctttacatttcaacttcgtggtgaaatttgttaggagacaagcgaacatggttgctcatactttagct 598158  T
Q  101 aggttgacagtctattctt-gggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctg 196  Q
    |    | | |||| ||||| || |||||||||||||||| ||||||||||||||| || | |||| |||||||||||||   |||||||| |||||| ||    
T  598157 a---aggcggtctgttcttaggctagtcaccgtattttttattcttatccttcttatattgaacattggttgattaatgataatagttaaatttgctttg 598061  T
Q  197 gtaaaa 202  Q
    ||||||    
T  598060 gtaaaa 598055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 185611 - 185426
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  || |||||| ||||||||| |||||||| ||||||||||| ||||| |||| ||    
T  185611 tgctattgtttctagtattatttatcagttatctttacatt-cacattcgaggtgtagtttgttaggagacaagcgaacatagttggtcatagtttagct 185513  T
Q  101 aggttgacagtctattcttgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgatagttaacttt 190  Q
    |||  |||   ||  |||||| ||||||||| |||||| |||||||||||||||||| |  ||| ||||| |||||||||||||||||||    
T  185512 agggcgac---ctgatcttggatagtcaccgcatttttaattcttatccttcttgtattgcacattggttaattaatgatagttaacttt 185426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3606759 - 3606607
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||| || |||| |||||||||| ||    
T  3606759 tgctattgtttctagtattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaatatggttgttcatactttagct 3606660  T
Q  101 aggttgacagtctattctt-gggtagtcaccgtatttttcattcttatccttct 153  Q
    ||| |||| | || ||||| || |||||||||||||||| ||||||||| ||||    
T  3606659 agggtgac-gcctgttcttaggctagtcaccgtatttttaattcttatcattct 3606607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 11870431 - 11870585
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||| ||||||||||||||| ||    
T  11870431 tgctattgtttctagtattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatactttagct 11870530  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgta 157  Q
    ||   | ||  || |||||||| || ||||| ||||||| ||||||||||| ||||||    
T  11870531 ag---ggcaacctgttcttgggctaatcaccatattttttattcttatcctacttgta 11870585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 7127393 - 7127536
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||  |||||||||||||| ||||     
T  7127393 tattgtttcaagtattatttatcagttatctttacattccaactttgatgtgaagtttgttaggagacaagcgaacatgattgctcatactttagctag- 7127491  T
Q  104 ttgacagtctattcttggg-tagtcaccgtatttttcattcttatcc 149  Q
      | | |||| |||||||| ||||||||| |||||| ||||||||||    
T  7127492 --ggcggtctgttcttgggctagtcaccgcatttttaattcttatcc 7127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 36194626 - 36194439
Alignment:
Q  16 tattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctat 115  Q
    |||||||||||  ||||||||| ||| ||| || ||| |||||||||||| ||||||||| ||||| |||||||||| |||| ||||| |||||   | |    
T  36194626 tattatttatcgattatctttatatttcaatttcgagatgaagtttgttaggagacaagaaaacatggttgctcatagtttagctagggtgaca---tgt 36194530  T
Q  116 tcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatg---atagttaactttgctctggtaaaa 202  Q
    ||||| | |||||||||||||||| |||||||||||||||||| | |||| |||||||||||||   ||||||||||||||| ||||||||    
T  36194529 tcttgagctagtcaccgtatttttaattcttatccttcttgtattgaacattggttgattaatgataatagttaactttgctttggtaaaa 36194439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23854099 - 23854200
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||  ||||||| ||||||| |||||||| |||||| ||||||||||||||| ||    
T  23854099 tgctattgtttctagtattagttatccgttatctttacattccaacttcaaggtgaactttgttaggagacaagcgaacatggttgctcatactttagct 23854198  T
Q  101 ag 102  Q
    ||    
T  23854199 ag 23854200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 8451140 - 8451050
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatact 94  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||| |||| |||||||    
T  8451140 tattgtgtctagtattatntatcagttatctttacattcaaacttcgaggtgaagtttgttangagacaagcgaacatggttgttcatact 8451050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 37712240 - 37712333
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatact 94  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||||| |||||||||||| |  ||||| ||||||||||||    
T  37712240 tgctattgtttctagtattatttatgagttatctttacattctaacttcgatgtgaagtctgttaagagacatgcaaacatggttgctcatact 37712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 9496948 - 9497047
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    ||||||| |||  |||||||||| || || ||||||| |||||||    ||||||||| ||| |||||||| ||||||||||||| |||||||| |||||    
T  9496948 tattgttgctaacattatttatctgtgatatttacatcccaacttcagagtgaagtttattaggagacaagcgaacatagttgcttatactttagctagg 9497047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 34707945 - 34707887
Alignment:
Q  123 tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||||| ||||||||| |||||||| ||||||||| | |||| || |||||||||||||    
T  34707945 tagtcatcgtattttttattcttattcttcttgtattgaacattgattgattaatgata 34707887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 14680329 - 14680508
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||| ||||||||||||||| ||    
T  14680329 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacatgcgaacatggttgctcatactttaact 14680428  T
Q  101 aggttgacagtctattct-tgggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgatag 182  Q
    ||   | | | || ||||  || |||||||||||||||| ||| | |||||||||||| | |||| |||||||||||| ||||    
T  14680429 ag---ggcggcctgttctcaggctagtcaccgtattttttattttcatccttcttgtattgaacattggttgattaataatag 14680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 11731689 - 11731511
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||||| ||||||||||||||| ||    
T  11731689 tgctactgtttctagtaatatttatcagttatctttacattccaacttcgaggtgaagtttgttaggaggcaagcgaacatggttgctcatactttagct 11731590  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | ||| ||  ||||||| |||||||| ||||||| |||||||| ||||||||| | |||| | ||||||||||||||    
T  11731589 ag---ggcagcctgctcttgggctagtcaccatattttttattcttattcttcttgtattgaacattcgttgattaatgata 11731511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 15606014 - 15605836
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||  ||||||| |||||| ||||||||| ||||| ||    
T  15606014 tgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaattttgttagcagacaagcgaacatggttgctcatgctttagct 15605915  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | |  |||||||||| |||||||| ||||| | |||||||||||||||||| | |||| ||||| ||||||||||    
T  15605914 ag---ggcggcttattcttgggctagtcaccatatttattattcttatccttcttgtattgaacattggttaattaatgata 15605836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21944648 - 21944470
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||| || |||||||||||||| ||||||| || ||| |||||||||||||||  |    
T  21944648 tgctattgtttctagtattatttatcagttatttttatattccaacttcgatgtgaagtttgttaaaagacaagcgatcattgttgctcatactttagtt 21944549  T
Q  101 aggttgacagtctattcttg-ggtagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||     |||    |||||| | |||||||||||||||| |||||||||||||||||| | |||| ||||||||||||||||    
T  21944548 ag---agcagcaggttcttgtgctagtcaccgtattttttattcttatccttcttgtattgaacattggttgattaatgata 21944470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 34104485 - 34104335
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||  ||||| ||||||||||  ||| ||    
T  34104485 tgctattgtttttagtattatttttcagttatctttacattcgaacttcgaggtgaagtttgttaggagacaagcaaacatggttgctcatagcttagct 34104386  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttct 153  Q
    |   || | |  | |||||||| |||||||||||||||| ||||||||||||||    
T  34104385 a---tggcggcatgttcttgggctagtcaccgtattttttattcttatccttct 34104335  T

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Target: chr6; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 27443097 - 27443251
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacatt---ccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||||||||||||||| | |||||||||||||||||   |||||||||||||||||||||||| |||| ||| |||||| ||||||||||  |||    
T  27443097 tgctattgtttctagtattatatttcagttatctttacattccaccaactttgaggtgaagtttgttaggagagaagcgaacatggttgctcatagctta 27443196  T
Q  98 tctaggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttctt 154  Q
     ||||   | | |||| |||||||| ||||||| |||||||| |||| ||||||||||    
T  27443197 gctag---ggcggtctgttcttgggctagtcactgtatttttgattcatatccttctt 27443251  T

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Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 28107309 - 28107408
Alignment:
Q  4 tattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctagg 103  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||| |||||||   ||||| ||||||||||||||| |||||    
T  28107309 tattgtttctagtattatttattagttatctttacattccaacttcgagctgtagtttgttaggagacaaccaaacatggttgctcatactttagctagg 28107408  T

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Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 3100415 - 3100493
Alignment:
Q  4 tattgtttctagtattatttatcagttatcttt-acattccaactttgaggtgaagtttgttaagagacaagagaacat 81  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  3100415 tattgtttatagtattatttatcagttatcttttacattccaactttgaggtgaagtttgttaggagacaagcgaacat 3100493  T

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Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 19690895 - 19690809
Alignment:
Q  5 attgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcat 91  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| || ||||| ||||||  ||||||||    
T  19690895 attgtttctagtattatttatcagttatctttacatttaaactttgaggtgaagtttgttaggaaacaagcgaacatgattgctcat 19690809  T

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Target: chr6; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 29368076 - 29367981
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttt 96  Q
    |||||||| ||||||||||| ||||||||||||||||| |||||||||  |||| |||||||||| || ||||| ||||||||||  |||||||||    
T  29368076 tgctattgcttctagtattagttatcagttatctttaccttccaacttcaaggtaaagtttgttaggaaacaagcgaacatagttattcatacttt 29367981  T

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Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 15053180 - 15053044
Alignment:
Q  16 tattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggttgacagtctat 115  Q
    |||||||||||| |||| |||||||||||| || ||||||||||||||||  |||||||  |||||  |||||||||||||| ||||   | ||| || |    
T  15053180 tattatttatcaattatatttacattccaatttcgaggtgaagtttgttagaagacaagcaaacatgattgctcatactttagctag---ggcagcctgt 15053084  T
Q  116 t-cttgggtagtcaccgtatttttcattcttatccttctt 154  Q
    | || || || ||||||||||||| |||||||||||||||    
T  15053083 tcctaggttaatcaccgtatttttaattcttatccttctt 15053044  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 3101267 - 3101324
Alignment:
Q  123 tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    |||||||||||||||| |||||||||||| ||||| | |||| | ||||||||||||||    
T  3101267 tagtcaccgtattttttattcttatccttgttgtattgaaca-ttgttgattaatgata 3101324  T

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Target: scaffold0446 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 357 - 535
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||||||||||  ||| ||    
T  357 tgctattgtttctaatattatttttcagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatagcttagct 456  T
Q  101 aggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgtactcaacagtggttgattaatgata 181  Q
    ||   | | | ||||  ||||| |||||||||||||||| |||||||| ||||||||| | |||| || |||||||||||||    
T  457 ag---ggcggcctatatttgggctagtcaccgtattttttattcttattcttcttgtattaaacactgattgattaatgata 535  T

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Target: scaffold0922 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 284 - 182
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatct 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| |||||||| |||||  ||||||||||||||| ||    
T  284 tgctattgtttctagtattatttatcagttatccttacattccaacttcgatgtgaagtttgttaggagacaagcgaacacggttgctcatactttaact 185  T
Q  101 agg 103  Q
    |||    
T  184 agg 182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 20330 - 20479
Alignment:
Q  6 ttgtttctagtattatttatcagttatctttacattccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatactttatctaggtt 105  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| ||| ||  || ||||||||||| ||||       
T  20330 ttgtttctagtattatttatcagttatctttacatgtcaactttgaggtgaagtttgttaggagacaagcgaatatgattactcatactttagctag--- 20426  T
Q  106 gacagtctattcttggg-tagtcaccgtatttttcattcttatccttcttgta 157  Q
    | ||  || |||||||| |||||| ||||||||| ||||||||| ||||||||    
T  20427 ggcaacctgttcttgggctagtcatcgtattttttattcttatcattcttgta 20479  T

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Target: scaffold0003 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 44264 - 44110
Alignment:
Q  1 tgctattgtttctagtattatttatcagttatctttacatt---ccaactttgaggtgaagtttgttaagagacaagagaacatagttgctcatacttta 97  Q
    ||||||||||||||||||||| | |||||||||||||||||   |||||||||||||||||||||||| |||| ||| |||||| ||||||||||  |||    
T  44264 tgctattgtttctagtattatatttcagttatctttacattccaccaactttgaggtgaagtttgttaggagagaagcgaacatggttgctcatagctta 44165  T
Q  98 tctaggttgacagtctattcttggg-tagtcaccgtatttttcattcttatccttctt 154  Q
     ||||   | | |||| |||||||| ||||||| |||||||| |||| ||||||||||    
T  44164 gctag---ggcggtctgttcttgggctagtcactgtatttttgattcatatccttctt 44110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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