View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_40 (Length: 273)
Name: NF16732_low_40
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 35181839 - 35182075
Alignment:
| Q |
19 |
gggtaaccataccacagaagatactgcaagctgttagaaagaaaagtgagacttcctgaaaaattcttatgaaataataatataagaattttaagtcccc |
118 |
Q |
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| T |
35181839 |
gggtaaccataccacagaagatactgcaagctgttagaaagaaaagtgagacttcctgaaaaattcttatgaaataataatataagaattttaagtcccc |
35181938 |
T |
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| Q |
119 |
tcattattgacaatgcttcagccctcaactgaggatattcagagatatgctctttttgatctagaattatggcattaatattgtttgttccctgaaaaca |
218 |
Q |
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| T |
35181939 |
tcattattgacaatgcttcagccctcaactgaggatattcagagatatgctctttttgatctagaattatggcattaatattgtttgttccctgaaaaca |
35182038 |
T |
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| Q |
219 |
ttaagattaaacatgttacaagaggtaaggtggaggg |
255 |
Q |
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| T |
35182039 |
ttaagattaaacatgttacaagaggtaaggtggaggg |
35182075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 35175899 - 35176116
Alignment:
| Q |
19 |
gggtaaccataccacagaagatactgcaagctgttagaaagaaaagtgagacttcctgaaaaattcttatgaaataataatataagaattttaagtcccc |
118 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| || | |||| |||||||||||||||||||||||| |
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| T |
35175899 |
gggtaaccataccaaagaagatactgcaagctgttagaaatgaaattgagacttcctgaaattttttgatga---tataatataagaattttaagtcccc |
35175995 |
T |
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| Q |
119 |
tcattattgacaatgcttcagccctcaactgaggatattcagagatatgctctttttgatctagaattatggcattaatattgtttgttccctgaaaaca |
218 |
Q |
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| T |
35175996 |
tcattattgacaatccttcggccctcagcggaggatattcagagatatgctcttttttatttagaataatggctttaacattgtttgttccctgaaagta |
35176095 |
T |
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| Q |
219 |
ttaagattaaacatgttacaa |
239 |
Q |
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| T |
35176096 |
ttaagaataaacatattacaa |
35176116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 35052558 - 35052752
Alignment:
| Q |
19 |
gggtaaccataccacagaagatactgcaagctgttagaaagaaaagtgagacttcctgaaaaattcttatgaaataataatataagaattttaagtcccc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| |||| |||||||||||||||||||| |
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| T |
35052558 |
gggtaaccataccacagaagatactgcaagctgttagaaaggaagttgagacttcctgaaaaatttgtatgatataa---tataagaattttaagtcccc |
35052654 |
T |
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| Q |
119 |
tcattattgacaatgcttcagccctcaactgaggatattcagagatatgctctttttgatctagaattatggcattaatattgtttgttccctgaaaa |
216 |
Q |
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|||||||||||||| |||||||| | ||| |||||||||| ||||||| |||||||| ||||| ||||||||| |||| |||| ||||||||||||| |
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| T |
35052655 |
tcattattgacaatccttcagcctttaacagaggatattccgagatatcctcttttttatctaaaattatggctttaaccttgtctgttccctgaaaa |
35052752 |
T |
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