View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16732_low_42 (Length: 265)

Name: NF16732_low_42
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16732_low_42
NF16732_low_42
[»] chr3 (10 HSPs)
chr3 (1-226)||(11020211-11020437)
chr3 (1-141)||(42340308-42340448)
chr3 (1-68)||(27608934-27609001)
chr3 (1-68)||(34497403-34497470)
chr3 (1-138)||(53497051-53497188)
chr3 (1-60)||(647194-647253)
chr3 (1-142)||(55199526-55199667)
chr3 (71-164)||(647312-647406)
chr3 (1-67)||(24176860-24176926)
chr3 (229-265)||(53497182-53497218)
[»] chr7 (8 HSPs)
chr7 (1-164)||(29200986-29201150)
chr7 (1-142)||(22289256-22289397)
chr7 (1-164)||(16731925-16732089)
chr7 (1-164)||(17710059-17710223)
chr7 (5-142)||(9328637-9328774)
chr7 (1-79)||(16098568-16098646)
chr7 (1-65)||(30493641-30493705)
chr7 (228-265)||(17877548-17877585)
[»] chr4 (18 HSPs)
chr4 (1-142)||(37245883-37246024)
chr4 (1-142)||(29655697-29655838)
chr4 (1-142)||(32577079-32577220)
chr4 (1-163)||(43840337-43840501)
chr4 (1-142)||(56065644-56065785)
chr4 (1-164)||(49951305-49951469)
chr4 (1-130)||(26422633-26422762)
chr4 (1-142)||(2064868-2065009)
chr4 (5-142)||(28426198-28426335)
chr4 (5-142)||(49119435-49119572)
chr4 (1-142)||(51735003-51735143)
chr4 (1-65)||(51259560-51259624)
chr4 (1-142)||(55735024-55735165)
chr4 (1-142)||(21321542-21321685)
chr4 (228-265)||(2065003-2065040)
chr4 (228-265)||(28537787-28537824)
chr4 (1-164)||(28537818-28537980)
chr4 (228-265)||(43840306-43840343)
[»] chr8 (9 HSPs)
chr8 (1-142)||(7127238-7127379)
chr8 (1-142)||(478087-478228)
chr8 (1-142)||(8451154-8451295)
chr8 (1-142)||(185622-185762)
chr8 (1-142)||(23853947-23854088)
chr8 (1-66)||(598268-598333)
chr8 (116-164)||(13415015-13415064)
chr8 (228-265)||(598237-598274)
chr8 (116-148)||(9496791-9496823)
[»] chr5 (16 HSPs)
chr5 (1-142)||(8388101-8388242)
chr5 (1-164)||(25730800-25730964)
chr5 (1-142)||(26597488-26597629)
chr5 (1-164)||(15988780-15988944)
chr5 (1-142)||(20204970-20205111)
chr5 (1-142)||(27532937-27533078)
chr5 (1-142)||(4268114-4268255)
chr5 (5-142)||(22767292-22767429)
chr5 (1-142)||(41940768-41940908)
chr5 (1-164)||(12660308-12660472)
chr5 (1-133)||(27292458-27292590)
chr5 (1-142)||(11375544-11375685)
chr5 (1-142)||(34652285-34652426)
chr5 (228-265)||(20205105-20205142)
chr5 (1-66)||(32632606-32632671)
chr5 (229-265)||(4268249-4268285)
[»] chr6 (7 HSPs)
chr6 (3-142)||(30802024-30802163)
chr6 (1-139)||(15606025-15606163)
chr6 (1-164)||(28107131-28107295)
chr6 (1-142)||(19690910-19691051)
chr6 (1-142)||(15053206-15053347)
chr6 (115-164)||(29368201-29368251)
chr6 (116-164)||(14680154-14680203)
[»] chr1 (10 HSPs)
chr1 (1-156)||(44527253-44527409)
chr1 (9-142)||(25682666-25682799)
chr1 (1-142)||(36733711-36733852)
chr1 (1-142)||(48949755-48949896)
chr1 (1-142)||(51113330-51113471)
chr1 (1-66)||(2885314-2885379)
chr1 (1-142)||(44602767-44602908)
chr1 (37-164)||(48166229-48166357)
chr1 (228-265)||(44602902-44602939)
chr1 (229-265)||(44527403-44527439)
[»] chr2 (7 HSPs)
chr2 (16-164)||(88551-88700)
chr2 (1-142)||(34695935-34696076)
chr2 (1-142)||(34718347-34718488)
chr2 (1-65)||(13109900-13109964)
chr2 (5-66)||(9710046-9710107)
chr2 (1-142)||(12130669-12130810)
chr2 (1-93)||(22845600-22845692)
[»] scaffold0446 (1 HSPs)
scaffold0446 (1-142)||(201-342)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11020211 - 11020437
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  11020211 aatcaccatggcccggagacgatagaccttacactggagtagttaagtcagactcgaagacaacccagttccatttgttcccatcagcaaagtaaatagc 11020310  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgagttaaatgtcatgtgtgtgccacatagacaactttg 199  Q
    ||||| |||||||| || |||||||||||||| ||||||| |||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11020311 atcgagtaaagctgatgtctccccctccaaaagtgtcatatttgtccactttcatttcatttgagttaaatgtcaagtgtgtgccacatagacaactttg 11020410  T
Q  200 cacagtcagcatctaccaacatgggta 226  Q
    |||||||||||||||||||||| ||||    
T  11020411 cacagtcagcatctaccaacataggta 11020437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 42340308 - 42340448
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||| ||| ||| ||||  ||||||| |||| |||||||||||||| | |  |||| ||||| |||||||||||| |||  |    
T  42340308 aatcaccatggcccggagacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggtcccatctgttcacatctgcaaagtgaatgac 42340407  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatat 141  Q
    ||||| ||  ||| |||||||||||||||| ||||||||||    
T  42340408 atcgagtagggctattgcctccccctccaacactgtcatat 42340448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 27608934 - 27609001
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccag 68  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| ||||||||||||||||||    
T  27608934 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccag 27609001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34497403 - 34497470
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccag 68  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| ||||||||||||||||||    
T  34497403 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccag 34497470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 53497188 - 53497051
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||||||| ||| |||  |||||| | |||| |||||||||||||||| |  |||| ||||  |||| ||||||| ||  ||    
T  53497188 aatcaccatggcccggagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggc 53497089  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtca 138  Q
     || | ||| |||  |||||||||||| ||||||||||    
T  53497088 ctctagtaaggctactgcctccccctcaaaaactgtca 53497051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 647194 - 647253
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaaga 60  Q
    |||||||||||||||||||||||||| ||| |||| |||||| | |||||||||||||||    
T  647194 aatcaccatggcccggagacgatagagcttgcactagagtagatgagtcagactcgaaga 647253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 55199667 - 55199526
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| |||| |||||||||  ||| |||  |||||||| |||| |||| ||||||||||| |  |||| ||||  || |  |||||| ||| ||    
T  55199667 aatcaccatgacccgtagacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggtcccatctgtttccaacaacaaagtgaatggc 55199568  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   |||||||||||||||||||||||||||    
T  55199567 atcgagtaaggcaactgcctccccctccaaaactgtcatatt 55199526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 647312 - 647406
Alignment:
Q  71 ccatttgttctcatctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactgtcatatt-gtccactgccatttcatttgag 164  Q
    |||| ||||| |||| ||||||| |||  |||||| ||| |||| |||||||||||||| |||||||||||| | || |||||||||| ||||||    
T  647312 ccatctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgag 647406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24176926 - 24176860
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccca 67  Q
    |||||||||| ||| ||||||||||| ||| |||| |||||| |  |||||||||||||||||||||    
T  24176926 aatcaccatgacccagagacgatagagcttgcactagagtagttgtgtcagactcgaagacaaccca 24176860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 53497218 - 53497182
Alignment:
Q  229 taatactagaaacgatagcatagaatttcgaatcacc 265  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  53497218 taatactagaaacaatagcatagaattccgaatcacc 53497182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 29200986 - 29201150
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||| ||||||||||| ||| |||| |||||||| |||||||||||||||||||||   ||||| ||||| |||| ||||||| |||  |    
T  29200986 aatcaccatggcccagagacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtttccatctgttcacatcagcaaagtgaatgac 29201085  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
    ||| | ||||  || | ||||||||||||||||||||||| |||||| ||| |||||| ||||||    
T  29201086 atcaagtaaacatgctacctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgag 29201150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 22289397 - 22289256
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| |||||||||||| ||| |  |||||||||| || | ||||||| ||| ||    
T  22289397 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggtcccatttgttcccaacggcaaagtgaatggc 22289298  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||     |||||||||||||||||||||||||    
T  22289297 atcgagtaaggcaaccacctccccctccaaaactgtcatatt 22289256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 16732089 - 16731925
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||||||| |||||| ||| |||| ||||||   |||| |||||||||||||| | | ||||| ||||| |||| ||| ||| ||| ||    
T  16732089 aatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggc 16731990  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
     |||| ||| |||  ||||||||||||||| ||||||||| ||| || |||||||||| ||||||    
T  16731989 ctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgag 16731925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 17710223 - 17710059
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||||||| |||||| ||| |||| ||||||   |||| |||||||||||||| | | ||||| ||||| |||| ||| ||| ||| ||    
T  17710223 aatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcagagtgaatggc 17710124  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
     |||| ||| |||  ||||||||||||||| ||||||||| ||| || |||||||||| ||||||    
T  17710123 ctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgag 17710059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 9328637 - 9328774
Alignment:
Q  5 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcg 104  Q
    |||||| ||||  ||||||||| ||| |||| ||||| |  |||||||||| |||||||||| |  |||| ||||  |||| ||||||| ||||||| ||    
T  9328637 accatgtcccgctgacgatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcg 9328736  T
Q  105 aataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    | ||| |||  |||||||||||||||||| ||||||||    
T  9328737 agtaaggctactgcctccccctccaaaacagtcatatt 9328774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16098646 - 16098568
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgtt 79  Q
    ||||||||||||||||||||||| || |||  ||| |||||| | |||| |||||||||||||||| |  |||||||||    
T  16098646 aatcaccatggcccggagacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtcccatttgtt 16098568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 30493641 - 30493705
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacc 65  Q
    ||||||||||||||| |||||||||| ||| |||| |||||  | |||| |||||||||||||||    
T  30493641 aatcaccatggcccgaagacgatagagcttgcactagagtaattgagtcggactcgaagacaacc 30493705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 17877585 - 17877548
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  17877585 ataatactagaaacaatagcatagaattacgaatcacc 17877548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 37245883 - 37246024
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||| ||||||| ||| ||| ||||  ||||||  ||||||||||||||||||||| |  |||| ||||| |||  ||||||| ||||||    
T  37245883 aatcaccatggcccagagacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggtcccatctgttcacataagcaaagtgaatagc 37245982  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  |||||||||||||||||||||||||||    
T  37245983 atcgagtaaggctactgcctccccctccaaaactgtcatatt 37246024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 29655697 - 29655838
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||| ||| |||||| ||| |||| |||||||  ||||||||||||||||||| | | ||||| ||||| |||| ||||||| |||  |    
T  29655697 aatcaccatggcccgaagatgatagagcttgcactagagtagcgtagtcagactcgaagacaacacggttccatctgttcacatcagcaaagtgaatgac 29655796  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  |||||| ||||||||||| ||||||||    
T  29655797 atcgagtaaggctactgcctctccctccaaaacagtcatatt 29655838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 32577079 - 32577220
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| ||||  |||||| || ||| |||| |||||||  |||||||||||||||||||||||  |||| ||||  |||| ||||||||||||||    
T  32577079 aatcaccatgtcccgctgacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagtcccatatgtttacatcagcaaagtaaatagc 32577178  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    | ||| ||| |||  | |||||||||||||||| ||||||||    
T  32577179 agcgagtaaggctagtacctccccctccaaaacagtcatatt 32577220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 43840337 - 43840501
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| ||| |||||||||| ||| || | |||||||| ||||  |||||||||||| || |   ||||||||| |||| ||||||| ||| ||    
T  43840337 aatcaccatggtccgaagacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggtctcatttgttcacatcagcaaagtgaatggc 43840436  T
Q  101 atcgaataaa-gctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttga 163  Q
    ||||| |||| | ||||| |||||||||||| ||||||||| |||||| |||||||||| |||||    
T  43840437 atcgagtaaaggttgttgtctccccctccaacactgtcatatttgtccgctgccatttcgtttga 43840501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 56065785 - 56065644
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| | ||||| |||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| | ||| || | ||||||| ||| ||    
T  56065785 aatcaccatggtctggagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggc 56065686  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   |||||||||||||||||||||||||||    
T  56065685 atcgagtaaggcaactgcctccccctccaaaactgtcatatt 56065644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 49951469 - 49951305
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||| |||||| ||| |||| | ||| |||| ||||||   |||| |||||||||||||| | | ||||| ||||| |||| ||||||| ||  ||    
T  49951469 aatcaccacggcccgaagatgataaagcttgcactagagtagacgagtcggactcgaagacaactcggttccatctgttcgcatcagcaaagtgaagggc 49951370  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
     |||| ||| |||  ||||||||||||||| ||||||||| ||| || |||||||||| ||||||    
T  49951369 ctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgctgccatttcgtttgag 49951305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 26422633 - 26422762
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagat-ccatttgttctcatctgcaaagtaaatag 99  Q
    |||||| ||| ||||  ||||||||| ||| |||| ||||| |  ||||||||||||||||||||| ||| |||| ||||  |||| |||||||||||||    
T  26422633 aatcactatgtcccgctgacgatagagcttgcactagagtatcagagtcagactcgaagacaaccc-gatcccatctgtttacatcagcaaagtaaatag 26422731  T
Q  100 catcgaataaagctgttgcctccccctccaa 130  Q
    |||||| ||| |||  |||||||| ||||||    
T  26422732 catcgagtaaggctactgcctccctctccaa 26422762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 2065009 - 2064868
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| || |||||||||||| |||   || |||||| | |||| ||||| ||||||||||   ||||| |||||||||| ||||||| ||  ||    
T  2065009 aatcaccatgacctggagacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgactccatctgttctcatcagcaaagtgaagggc 2064910  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     |||| ||| |||  ||||||||||| ||| |||||||||||    
T  2064909 gtcgagtaaggctactgcctcccccttcaatactgtcatatt 2064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 28426335 - 28426198
Alignment:
Q  5 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcg 104  Q
    |||||| ||||  ||||||||| ||  |||| ||||| |  ||||||||| ||||||||||| |  |||| ||||  |||| ||||||| ||||||| ||    
T  28426335 accatgtcccgctgacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcg 28426236  T
Q  105 aataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    | ||| |||  |||||||||||||||||| ||||||||    
T  28426235 agtaaggctactgcctccccctccaaaacagtcatatt 28426198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 49119435 - 49119572
Alignment:
Q  5 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcg 104  Q
    |||||| ||||  ||||||||| ||  |||| ||||| |  ||||||||| ||||||||||| |  |||| ||||  |||| ||||||| ||||||| ||    
T  49119435 accatgtcccgctgacgatagagctggcactagagtatcagagtcagacttgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcg 49119534  T
Q  105 aataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    | ||| |||  |||||||||||||||||| ||||||||    
T  49119535 agtaaggctactgcctccccctccaaaacagtcatatt 49119572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 51735003 - 51735143
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| || ||||||||||| ||| |||| ||||||   || | |||||||||||||| | |  | || | ||| |||| ||||||| ||| ||    
T  51735003 aatcaccatggtccagagacgatagagcttgcactagagtagaggagcctgactcgaagacaactc-gtcctatctattcacatcagcaaagtgaatggc 51735101  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  |||||||||||||||||||||||||||    
T  51735102 atcgagtaaggctactgcctccccctccaaaactgtcatatt 51735143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 51259560 - 51259624
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacc 65  Q
    ||||||||||||||| |||||||||  ||| |||| |||||||| |||| |||||||||||||||    
T  51259560 aatcaccatggcccgaagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacc 51259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 55735165 - 55735024
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| ||| |||||||||| ||| |||| |||||| | | || |||||||| | ||||| | ||||| ||||| || |  |||||| ||  ||    
T  55735165 aatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggttccatgtgttcgcaacaacaaagtgaagggc 55735066  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     |||| ||| |||  ||||||||||||||| |||||||||||    
T  55735065 ctcgagtaaggctactgcctccccctccaatactgtcatatt 55735024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 21321685 - 21321542
Alignment:
Q  1 aatcaccatggcccggagacgatagacc--ttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaata 98  Q
    |||||||||| ||| ||||| ||||| |  || |||| |||||| | |||| |||||||||||||||| |  |||| ||||  |||| | ||||| ||      
T  21321685 aatcaccatgaccctgagacaatagagcaattgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagaaaagtgaagg 21321586  T
Q  99 gcatcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    || |||| ||| ||| ||| ||||||||||||||||||||||||    
T  21321585 gcctcgagtaaggctattgtctccccctccaaaactgtcatatt 21321542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 2065040 - 2065003
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  2065040 ataatactagaaacaatagcatataatttcgaatcacc 2065003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 28537787 - 28537824
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  28537787 ataatactagaaacaatagcatagaattttgaatcacc 28537824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28537818 - 28537980
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||| ||||||||||| ||| ||||  ||||| | |||| |||| ||| ||||||| |  |||| ||||| ||||  |||||| ||  ||    
T  28537818 aatcaccatggcccagagacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggtcccatctgttcgcatcaacaaagtgaagggc 28537917  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatattgt-ccactgccatttcatttgag 164  Q
     |||| ||| |||  ||||||||||||  ||||| ||||||| | || |||||||||| ||||||    
T  28537918 ctcgagtaaggctactgcctccccctc--aaactatcatattttcccgctgccatttcgtttgag 28537980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 43840306 - 43840343
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  43840306 ataatactagaaacaatagcatagaattccgaatcacc 43840343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 7127379 - 7127238
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||| ||| ||| ||||  ||||||  |||||||||||||| |||||| |  |||| ||||| |||| ||||||| ||||||    
T  7127379 aatcaccatggcccggagacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggtcccatctgttcacatcagcaaagtgaatagc 7127280  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  | ||||||||||||||||| |||||||    
T  7127279 atcgagtaaggctactacctccccctccaaaactttcatatt 7127238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 478087 - 478228
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||  ||||||||||||||| ||| |||| ||||||   ||||||| ||||||| ||||| |  |||| | ||| |||  ||||||| ||| ||    
T  478087 aatcaccataacccggagacgatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggc 478186  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  |||||||||||||||||||||||||||    
T  478187 atcgagtaaggctactgcctccccctccaaaactgtcatatt 478228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8451154 - 8451295
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| || |||||||||| | ||| ||||  ||||| | ||||||||||||||||||||| |  ||||  |||| |||| || |||| ||| |     
T  8451154 aatcaccatgacctggagacgataaagcttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatgga 8451253  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| |||||||  ||||||||||||||| |||||||||||    
T  8451254 atcgagtaaagctactgcctccccctccaacactgtcatatt 8451295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 185622 - 185762
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| |||||||||| ||| ||| ||||  ||||||  ||||||||||| ||||||||| | ||||| | ||| ||||  |||||| |||||     
T  185622 aatcaccatggtccggagacgaaagagcttgcactaaagtagcagagtcagactcgtagacaacccggttccatctattcacatcaacaaagtgaatagt 185721  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  | ||| |||||||||||||||||||||    
T  185722 atcgagtaaggctacttcct-cccctccaaaactgtcatatt 185762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 23854088 - 23853947
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||||||| ||| |||| |||| | | |||| |||||||||||||| |||   ||| ||||  ||||  |||||| ||| ||    
T  23854088 aatcaccatggcccggagacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtctcatctgttagcatcaacaaagtgaatggc 23853989  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     || | ||| |||  |||||| ||||||||||||||||||||    
T  23853988 ctcaagtaaggctactgcctcaccctccaaaactgtcatatt 23853947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 598268 - 598333
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 66  Q
    |||||||||| || | |||||||||| ||| |||| ||||||||||||| |||| |||||||||||    
T  598268 aatcaccatgacctgaagacgatagagcttgcactagagtagctaagtccgacttgaagacaaccc 598333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 13415064 - 13415015
Alignment:
Q  116 tgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  13415064 tgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgag 13415015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 598237 - 598274
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  598237 ataatactagaaacaatagcatagaacttcgaatcacc 598274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 9496823 - 9496791
Alignment:
Q  116 tgcctccccctccaaaactgtcatattgtccac 148  Q
    |||||| ||||||||||||||||||||||||||    
T  9496823 tgcctcaccctccaaaactgtcatattgtccac 9496791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 8388242 - 8388101
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||| |||||||||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| ||||| || | ||||||| ||| ||    
T  8388242 aatcaccatggcctggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaaccgcaaagtgaatggc 8388143  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   |||||||||||||||||||||||||||    
T  8388142 atcgagtaaggcaactgcctccccctccaaaactgtcatatt 8388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 25730964 - 25730800
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| ||| ||||||||||| ||| |||| |||||| | |||| |||||||||||||| |||  |||| ||||| |||| ||||||| ||  ||    
T  25730964 aatcaccatgaccctgagacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagtcccatctgttcgcatcagcaaagtgaagggc 25730865  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
     |||| ||| |||  ||||||||||||||||||||||||| ||| || |||||||||| ||||||    
T  25730864 ctcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgag 25730800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 26597488 - 26597629
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||| |||||||||||||||| |   ||| | ||| || ||||||||| ||| ||    
T  26597488 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtctcatctattcccaactgcaaagtgaatggc 26597587  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   ||||||||||||||||| |||||||||    
T  26597588 atcgagtaaggcaactgcctccccctccaaaattgtcatatt 26597629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 15988780 - 15988944
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||| | ||||||||||  || |||| |||||||| || | |||| ||||||||||| |  |||| ||||| |||| ||||||||||  ||    
T  15988780 aatcaccatggcctgaagacgatagagattgcactagagtagctgagacggacttgaagacaacccggtcccatatgttcgcatcagcaaagtaaagggc 15988879  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
     |||| ||| | |  ||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  15988880 ctcgagtaaggttactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgag 15988944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 20205111 - 20204970
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| |||||||| |||||| ||| |||| |||||| | |||| |||||||||||||| | | ||||| ||||| || |  |||||| ||| ||    
T  20205111 aatcaccatgacccggagaggatagagcttgcactagagtagatgagtcggactcgaagacaactcggttccatctgttcgcaacaacaaagtgaatggc 20205012  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     |||| ||| |||  ||||||||||||||| |||||||||||    
T  20205011 ctcgagtaaggctactgcctccccctccaatactgtcatatt 20204970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 27532937 - 27533078
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| ||||||||||||| |   | ||||  || ||| ||||| |||||||| ||||||| |  |||| | ||| |||| ||||||| |||  |    
T  27532937 aatcaccatgacccggagacgataaagtctgcactaaagaagcaaagtcggactcgaaaacaacccggtcccatctattcacatcagcaaagtgaatgac 27533036  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  27533037 atcgaataaagctattgcctccccctccaaaactgttatatt 27533078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 4268255 - 4268114
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||||||| |||||| ||| |||| |||||| | |||| |||||||||| ||||| |  |||  ||||  |||| ||||||| ||  ||    
T  4268255 aatcaccatggcccggagatgatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtcccacctgttagcatcagcaaagtgaagggc 4268156  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     || | ||| |||  |||||||||||||||||||||||||||    
T  4268155 ctctagtaaggctactgcctccccctccaaaactgtcatatt 4268114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 22767292 - 22767429
Alignment:
Q  5 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcg 104  Q
    |||||| ||||  ||||||||| ||| |||| ||||| |  ||||| ||||||||||||||| |  |||| ||||  |||| ||||||| ||||||| ||    
T  22767292 accatgtcccgctgacgatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcg 22767391  T
Q  105 aataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    | ||| |||  |||||||||||||||||| ||||||||    
T  22767392 agtaaggctactgcctccccctccaaaacagtcatatt 22767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 41940768 - 41940908
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||| |||| || |||||||||||  || |||| |||||| | |||| |||||||||||||||| | |||| |||||| |||  ||||||| |||  |    
T  41940768 aatcacaatggtccagagacgatagagtttgcactagagtagttgagtcggactcgaagacaaccc-ggtccagttgttcacatgagcaaagtgaatgac 41940866  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    || || ||| ||| ||| ||||||||||||||||||||||||    
T  41940867 attgagtaaggctattgtctccccctccaaaactgtcatatt 41940908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 12660472 - 12660308
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||| ||||||| |||||||||| ||| |||| |||||||| |||||||||||| || ||| | |   ||||||||| |||  ||||||| |||  |    
T  12660472 aatcaccgtggcccgaagacgatagagcttgcactagagtagctgagtcagactcgacgataacacggtctcatttgttcacattagcaaagtgaatgac 12660373  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
    ||||| |||  ||  |||||||| ||| || ||||||||| ||| || |||||||||| ||||||    
T  12660372 atcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgag 12660308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 27292590 - 27292458
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||| ||||||||||||  || |||| ||| || | ||||  ||||||||||||||| |  |||| |||| ||||| ||||||| ||  ||    
T  27292590 aatcaccatggcctggagacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtcccatctgttatcatcagcaaagtgaagggc 27292491  T
Q  101 atcgaataaagctgttgcctccccctccaaaac 133  Q
    ||| | ||| ||| |||||||||||| ||||||    
T  27292490 atctagtaaggctattgcctcccccttcaaaac 27292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 11375544 - 11375685
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| |||||||||||||| ||| |||| || ||| | | |||||||| |||||||||| |  |||| | ||  |||| ||||| | ||  ||    
T  11375544 aatcaccatggaccggagacgatagagcttgcactagaatagatgaatcagactcaaagacaacccggtcccatatatttgcatccgcaaaatgaagggc 11375643  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     |||| ||| |||  || ||||||||||||||||||||||||    
T  11375644 ctcgagtaaggctactgtctccccctccaaaactgtcatatt 11375685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34652285 - 34652426
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagat-ccatttgttctcatctgcaaagtaaatag 99  Q
    |||||||||||||| |||||| |||| ||| |||| ||||||   |||| | |||||||||||||| ||| |||| ||||| |||| ||||||| ||| |    
T  34652285 aatcaccatggcccagagacggtagagcttgcactagagtagtcgagtcgggctcgaagacaaccc-gatcccatctgttcacatcggcaaagtgaatgg 34652383  T
Q  100 catcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    |||||| ||| | | ||  |||||| | ||| |||||||||||    
T  34652384 catcgagtaaggttattatctccccttacaacactgtcatatt 34652426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 20205142 - 20205105
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  20205142 ataatactagaaacaatagcatagaattttgaatcacc 20205105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32632671 - 32632606
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 66  Q
    |||||| ||||| ||||||||||| | ||||||||  ||||| | |||||||||| ||||||||||    
T  32632671 aatcactatggctcggagacgataaagcttacactaaagtagatgagtcagactcaaagacaaccc 32632606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 4268285 - 4268249
Alignment:
Q  229 taatactagaaacgatagcatagaatttcgaatcacc 265  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  4268285 taatactagaaacaatagcatagaattccgaatcacc 4268249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 30802024 - 30802163
Alignment:
Q  3 tcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcat 102  Q
    |||||||||| |||| |||||||| ||| ||||  ||||||| | || ||||||||||||||| ||  |||||| ||| |||||||||||||||| ||||    
T  30802024 tcaccatggctcggaaacgatagagcttgcactaaagtagctgaatcggactcgaagacaacctagtcccattttttcacatctgcaaagtaaatggcat 30802123  T
Q  103 cgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    | | ||| |||  |||||||||| ||||||||||||||||    
T  30802124 ctagtaaggctactgcctcccccaccaaaactgtcatatt 30802163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 15606025 - 15606163
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| ||  ||||||||||| ||| |||| |||||||| |||| |||| ||||||||||| |  |||||||||| ||||  |||||| ||| ||    
T  15606025 aatcaccatgacctagagacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggtcccatttgttcccatcaacaaagtgaatggc 15606124  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcat 139  Q
    ||||| ||| |||  ||||||||||||||||||||||||    
T  15606125 atcgagtaaggctactgcctccccctccaaaactgtcat 15606163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 28107295 - 28107131
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagat-ccatttgttctcatctgcaaagtaaatag 99  Q
    |||||||||||||||||||||||||| ||| |||| |||||||  ||| |||||||||||||| |  ||| |||| | |||  || |||||||| ||| |    
T  28107295 aatcaccatggcccggagacgatagagcttgcactagagtagcggagttagactcgaagacaa-cgtgatcccatctattcatatttgcaaagtgaatgg 28107197  T
Q  100 catcgaataaagctgttgcctccccctccaaaactgtcatat-tgtccactgccatttcatttgag 164  Q
    |||| | ||| |||  |||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  28107196 catcaagtaaggctactgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgag 28107131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 19690910 - 19691051
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| | | ||||||||||| ||| ||||  ||||||| ||||||||||||||||||| | |   ||| ||||| |||| ||||||| |||  |    
T  19690910 aatcaccatgactcagagacgatagagcttgcactaaagtagctgagtcagactcgaagacaactcggtcacatctgttcacatcagcaaagtgaatgac 19691009  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||||||| ||| |||||||||| |||||||| ||||||||    
T  19691010 atcgaataaggctattgcctccccttccaaaacggtcatatt 19691051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 15053206 - 15053347
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||| |||||||||   || |||| |||||||| |||| |||||||||||||||  |   ||||| ||| | || |||| |  ||| ||    
T  15053206 aatcaccatggcccgaagacgatagcgtttgcactagagtagctgagtcggactcgaagacaaccttgtctcattttttcacgtcagcaaggcgaatggc 15053305  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| |||  ||||||||||||||| ||| |||||||    
T  15053306 atcgagtaaggctactgcctccccctccaacactatcatatt 15053347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 29368201 - 29368251
Alignment:
Q  115 ttgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
    |||||||||||||||||||||||||| || ||| |||||||||| ||||||    
T  29368201 ttgcctccccctccaaaactgtcatatttatccgctgccatttcttttgag 29368251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 14680203 - 14680154
Alignment:
Q  116 tgcctccccctccaaaactgtcatattgt-ccactgccatttcatttgag 164  Q
    ||||||||||||||| ||||||||||| | || |||||||||||||||||    
T  14680203 tgcctccccctccaatactgtcatattttcccgctgccatttcatttgag 14680154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 44527409 - 44527253
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||||||| |||||| ||| |||  |||||| | |||| |||||||||||||||| |  |||| ||||  |||| ||||||| ||  ||    
T  44527409 aatcaccatggcccggagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcagcaaagtgaagggc 44527310  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcata-ttgtccactgccattt 156  Q
     || | ||| |||  ||||||||||||||||||||||||| |||||| |||||||||    
T  44527309 ctctagtaaggctactgcctccccctccaaaactgtcatatttgtccgctgccattt 44527253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 25682799 - 25682666
Alignment:
Q  9 tggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcgaata 108  Q
    |||||||||||||||||| |||  ||| |||||||| ||||| ||||||||||| ||| |  |||| ||||| |||  ||||||| |||  |||||| ||    
T  25682799 tggcccggagacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggtcccatctgttcacattagcaaagtgaatgacatcgagta 25682700  T
Q  109 aagctgttgcctccccctccaaaactgtcatatt 142  Q
    | |||  ||||||||||||||| |||||||||||    
T  25682699 aggctactgcctccccctccaacactgtcatatt 25682666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 36733852 - 36733711
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||| |||||||||||||||||| | ||| |||| ||||     ||||||||||||||||||||| |  |||||||||| |||| ||||||| |||| |    
T  36733852 aatcatcatggcccggagacgatatagcttgcactagagttatagagtcagactcgaagacaacccggtcccatttgttcacatcagcaaagtgaataac 36733753  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    || || |||  ||  |||||||||||||||||||| ||||||    
T  36733752 attgagtaagactactgcctccccctccaaaactgccatatt 36733711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 48949755 - 48949896
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| |||   ||||||||||||||| |  |||| ||||| || |  |||||| ||| ||    
T  48949755 aatcaccatggcccggagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatcgc 48949854  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   ||||||||||||||||||| |||||||    
T  48949855 atcgagtaaggcaactgcctccccctccaaaactttcatatt 48949896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 51113471 - 51113330
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||||||| ||||||||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| ||||| || |  |||||| |||  |    
T  51113471 aatcaccatggcccagagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatctgttcccaacaacaaagtgaatgac 51113372  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   |||||||||||||||||| || |||||    
T  51113371 atcgagtaaggcaactgcctccccctccaaaacggttatatt 51113330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2885379 - 2885314
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 66  Q
    ||||||||| ||||| |||||||||| ||| |||| |||||||| |||| ||||||||||||||||    
T  2885379 aatcaccatagcccgaagacgatagagcttgcactagagtagctgagtctgactcgaagacaaccc 2885314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 44602908 - 44602767
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||||||||||| |||||| ||| |||| |||||||  ||| |||||||||| |||||| |   ||| ||||| |||| | ||||| |||  |    
T  44602908 aatcaccatggcccggagatgatagagcttgcactagagtagcggagttagactcgaaggcaacccggtctcatctgttcacatcagtaaagtgaatgac 44602809  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| |||  ||  || |||||||||||||| |||||||||    
T  44602808 atcgagtaagactaatgtctccccctccaaaattgtcatatt 44602767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 48166357 - 48166229
Alignment:
Q  37 gagtagctaagtcagactcgaagacaacccagatcc-atttgttctcatctgcaaagtaaatagcatcgaataaagctgttgcctccccctccaaaactg 135  Q
    |||||||| | ||||||||||||||||||| ||||| || | ||| |||  ||||||| |||  |||||| ||| ||| ||| ||||| |||||||||||    
T  48166357 gagtagctgaatcagactcgaagacaaccc-gatcccatatattcacataagcaaagtgaatgacatcgagtaaggctattgtctcccactccaaaactg 48166259  T
Q  136 tcata-ttgtccactgccatttcatttgag 164  Q
    ||||| |||  | |||||||||||||||||    
T  48166258 tcatatttgctcgctgccatttcatttgag 48166229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 44602939 - 44602902
Alignment:
Q  228 ataatactagaaacgatagcatagaatttcgaatcacc 265  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  44602939 ataatactagaaacaatagcatagaattttgaatcacc 44602902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 44527439 - 44527403
Alignment:
Q  229 taatactagaaacgatagcatagaatttcgaatcacc 265  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  44527439 taatactagaaacaatagcatagaattccgaatcacc 44527403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 88700 - 88551
Alignment:
Q  16 gagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagcatcgaataaagctgt 115  Q
    ||||||||||| ||| |||| |||||| | |||| |||||||||||||||| |  |||| ||||  ||||  |||||| ||  || |||| ||| |||      
T  88700 gagacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaacaaagtgaagggcctcgagtaaggctac 88601  T
Q  116 tgcctccccctccaaaactgtcata-ttgtccactgccatttcatttgag 164  Q
    ||||||||||||||||||||||||| ||| ||| ||||||||||||||||    
T  88600 tgcctccccctccaaaactgtcatatttgcccattgccatttcatttgag 88551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34695935 - 34696076
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| |||||||||||||   ||| |||| |||||||  |||| ||||||||||||||||    |||| | ||  |||| ||||||| ||| ||    
T  34695935 aatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggc 34696034  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     | || ||| |||  |||||||||||||||||||||||||||    
T  34696035 cttgagtaaggctactgcctccccctccaaaactgtcatatt 34696076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34718347 - 34718488
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| |||||||||||||   ||| |||| |||||||  |||| ||||||||||||||||    |||| | ||  |||| ||||||| ||| ||    
T  34718347 aatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttcccatctattgacatcagcaaagtgaatggc 34718446  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     | || ||| |||  |||||||||||||||||||||||||||    
T  34718447 cttgagtaaggctactgcctccccctccaaaactgtcatatt 34718488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13109900 - 13109964
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacc 65  Q
    ||||||||||||||| |||||||||| ||| |||| ||||||   |||| |||||||||||||||    
T  13109900 aatcaccatggcccgaagacgatagagcttccactagagtagaagagtcggactcgaagacaacc 13109964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 9710107 - 9710046
Alignment:
Q  5 accatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaaccc 66  Q
    |||||| ||||  ||||||||| ||| |||| ||||| | ||||||||||||||||||||||    
T  9710107 accatgtcccgctgacgatagagcttgcactagagtatcaaagtcagactcgaagacaaccc 9710046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 12130669 - 12130810
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    |||||||||| |||| ||| |||||| |||  ||| |||||| | ||||||||||||||| |||||   ||||| | ||  |||| ||||||| || |||    
T  12130669 aatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccgattccatctatttgcatcagcaaagtgaagagc 12130768  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
     || | ||| |||  ||||||||||||||| ||| |||||||    
T  12130769 ctcaagtaaggctactgcctccccctccaacactatcatatt 12130810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 22845692 - 22845600
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagt 93  Q
    ||||||||||  | |||||||||||| ||| |||| |||||| | |||  |||||||||||||||| |  |||| ||||| |||| |||||||    
T  22845692 aatcaccatgatctggagacgatagagcttgcactagagtagattagttggactcgaagacaacccggtcccatctgttcgcatcagcaaagt 22845600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 342 - 201
Alignment:
Q  1 aatcaccatggcccggagacgatagaccttacactcgagtagctaagtcagactcgaagacaacccagatccatttgttctcatctgcaaagtaaatagc 100  Q
    ||||||||||| | ||||| |||||  ||| |||| |||||||| |||| |||||||||||||||| |  |||| | ||| || | ||||||| ||| ||    
T  342 aatcaccatggtctggagatgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggc 243  T
Q  101 atcgaataaagctgttgcctccccctccaaaactgtcatatt 142  Q
    ||||| ||| ||   ||||||||||||| |||||||||||||    
T  242 atcgagtaaggcaactgcctccccctcccaaactgtcatatt 201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University