View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_44 (Length: 261)
Name: NF16732_low_44
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 10072366 - 10072113
Alignment:
| Q |
8 |
ccaagaaaatgaaccaaatgagttacaacagagttagcagcaccagcagtagcagtggtaaaggatcatcattttaccatggaaaatgcagaggatttag |
107 |
Q |
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| T |
10072366 |
ccaaaaaaatgaaccaaatgagttacaacagagttagcagcaccagcagtagcagtggtagaggatcatcattttaccatggaaaatgcagaggatttag |
10072267 |
T |
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| Q |
108 |
gctaaacctcacaagactttacttttcgcggctacgcaaaagagtcaacttcttcctcggaatctttgataagttgaaactgtctcatgtacaagctttt |
207 |
Q |
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| T |
10072266 |
gctaaacctcacaagactttacttttcgcggctacgcaaaagagtcaacttcttcctcagaatctttgataagttgaagctgtctcatgtacaaggtttt |
10072167 |
T |
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| Q |
208 |
cagttgttgaagaaagttttctgcagaaaaagtggattcaaaagaaacaatagc |
261 |
Q |
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| T |
10072166 |
cagttgttgaagaaagttttctgcagaaaaagtggattcaaaagaaacaatagc |
10072113 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 30696651 - 30696699
Alignment:
| Q |
212 |
tgttgaagaaagttttctgcagaaaaagtggattcaaaagaaacaatag |
260 |
Q |
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| T |
30696651 |
tgttgaagaaagtgttttgtagaaaaattggtttcaaaagaaacaatag |
30696699 |
T |
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