View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_45 (Length: 259)
Name: NF16732_low_45
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49200990 - 49200753
Alignment:
| Q |
1 |
gaacatccagcaaaaaatggtacaaattacattgaactttactcctcttacnnnnnnnccctctaaatttgcattgtttgaatcactatattttgaaatg |
100 |
Q |
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| T |
49200990 |
gaacatccagcaaaaaatggtacaaattacattgaactttactc---ttacaaaaaa-ccctctaaatttgcattgtttgaataactatattttgaaatg |
49200895 |
T |
|
| Q |
101 |
tgaacaaatttttattaactctgttatattggtaggaaattttatttactttgttatattgagaacaagttgggattgatcatttgggatgtttttcagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49200894 |
tgaacaaatttttattaactctgttatattggtaggaaattttatttactttgttatattgagaacaagttgggattgatcatttgggatgtttttcagg |
49200795 |
T |
|
| Q |
201 |
aagtagataggggtgaacaaggggcgggttgggatgtgttac |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
49200794 |
aagtagataggggtgaacaaggggcgggttgggatgtgttac |
49200753 |
T |
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