View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_46 (Length: 257)
Name: NF16732_low_46
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 31703727 - 31703475
Alignment:
| Q |
1 |
agctccatacatccaccctaaaagtggcctaaaatttgtggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31703727 |
agctccatacatccaccctaaaagtggcctaaaatttgaggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaa |
31703628 |
T |
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| Q |
101 |
agcatatacatgtgaattaagatggtaggttttattcagcatgtcgtaggtgttgtcatacggtagaaatgctaatcgtcaagtaagtttgataggcacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31703627 |
agcatatacatgtgaattaagatggtaggttttattcagcatgtcgtaggtgttgtcatacggtagaaatgctaattgtcaagtaagtttgataggcacc |
31703528 |
T |
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| Q |
201 |
taattagatcaggcccatgagatttagaagcagttttgagtttcttctcactc |
253 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31703527 |
taattaggtcaggcccatgagatttagaagcagttttgagtttcttctcactc |
31703475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31653383 - 31653278
Alignment:
| Q |
1 |
agctccatacatccaccctaaaagtggcctaaaatttgtggatcggacacgttctcctttaggataaattctgaggatatttttctgtgtgaacctgaaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
31653383 |
agctccatacatccaccctaaatgtggcctaaaatttgtggattgaacacgttctcctttaggataaattctaaggatatttttttgcgtgaacctgaaa |
31653284 |
T |
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| Q |
101 |
agcata |
106 |
Q |
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| |||| |
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| T |
31653283 |
aacata |
31653278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 31653235 - 31653145
Alignment:
| Q |
163 |
gtagaaatgctaatcgtcaagtaagtttgataggcacctaattagatcaggcccatgagatttagaagcagttttgagtttcttctcactc |
253 |
Q |
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|||||||||||||| || | |||||||||||| |||||||||| || | |||||||| | |||||||| ||||||||||||||||||| |
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| T |
31653235 |
gtagaaatgctaatgttcgtgaaagtttgataggtacctaattagctcggctccatgagactcagaagcagatttgagtttcttctcactc |
31653145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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