View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_5 (Length: 629)
Name: NF16732_low_5
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 616
Target Start/End: Original strand, 10023559 - 10024171
Alignment:
| Q |
1 |
ttattatgatattgttttatcgattttcgatcaatcttttgtatattccgtaaccttttgtttatgatcaaaataatataataaaagaaaaatcactggc |
100 |
Q |
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| T |
10023559 |
ttattatgatattgttttatcgattttcgatcaatcttttgtatattccgtaaccttttgtttatgatcaaaataatataataaaagaaaaatcactggc |
10023658 |
T |
|
| Q |
101 |
tcatgcatctaatgaagttaatgagtagtaaactaattatcctgcttgatttcacg-ctgcagctataaagcagagaatggagaaggatgttgatgaagt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10023659 |
tcatgcatctaatgaagttaatgagtagtaaactaattatcctgcttgatttcacgtctgcagctataaagcagagaatggagaaggatgttgatgaagt |
10023758 |
T |
|
| Q |
200 |
taagaaaactgcatatttcttaaagaccaaagttgaagagctggacaaagaggtatgatctctactgaaagtatttcggtgttttattaagtacttagat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10023759 |
taagaaaactgcatatttcttaaagaccaaagttgaagagctggacaaagaggtatgatctctactgaaagtatttcggtgttttattaagtacctagat |
10023858 |
T |
|
| Q |
300 |
tcttgttattaactcatcacattatgtgtcgcagaatttggctaataggcagaagcctgcctgtggaaaaggatcagctgttgaccggtcaagaacagca |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
10023859 |
tcttgttattaactcatcacattatgtgtcgcagaatttggctaataggcagaagcctgcttgtggaaaaggatcggctgttgaccggtcaagaacagca |
10023958 |
T |
|
| Q |
400 |
acgacaatgtcagtaattatccatcgttttatctatcatttaaacccttaacactaggtcatactatacttgtagatgcttattatgctatgtcagtagt |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10023959 |
acgacaatgtcagtaattatccatcgttttatctatcatttaaacacttaacactaggtcatactatacttgtagatgcttattatgctatgtcagtagt |
10024058 |
T |
|
| Q |
500 |
ttctgaaaacatatgtctaaattgtttatgatgtcattcctactcattgaggtctaagaatttgattaagttctcaccttaattaggcctcaaatttcaa |
599 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10024059 |
ttctgaaaacatatttctaaattgtttatgatgtcattcctactcattgaggtctaagaatttgattaagttctcacc----ttaggcctcaaatttcaa |
10024154 |
T |
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| Q |
600 |
cattataattattattg |
616 |
Q |
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||||||||||||||||| |
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| T |
10024155 |
cattataattattattg |
10024171 |
T |
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