View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_50 (Length: 245)
Name: NF16732_low_50
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 233
Target Start/End: Original strand, 53788913 - 53789137
Alignment:
| Q |
3 |
tatacttctctcattcatttcataataccactagttgcaacaaactataggctatagctaataataaattacatatacaattatacattcttataacatt |
102 |
Q |
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| T |
53788913 |
tatacttctctcattcatttcataataccacaagtcgcaacaaactatag-------ctaataataaattacatatacaattatacattcttataacatt |
53789005 |
T |
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| Q |
103 |
tccgtatctgagtccatcaaaaagacaacg--caattgttgcaatccaactacagacgatggtataagtattttagttatgttgatatggaaaagaaaag |
200 |
Q |
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| T |
53789006 |
tc-gtatctgagtccatcaaaaagacaacgtgcaattgttgcaatccaactacagacgatggtataagtattttagttatgttgatatggaaaagaaaag |
53789104 |
T |
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| Q |
201 |
gagaacttgattagatagaagttgaaaaatgat |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
53789105 |
gagaacttgattagatagaagttgaaaaatgat |
53789137 |
T |
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