View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_54 (Length: 224)
Name: NF16732_low_54
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_54 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5437512 - 5437289
Alignment:
| Q |
1 |
caccatcaacagcaacaatgatcaacaaaaacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgat |
100 |
Q |
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| T |
5437512 |
caccatcaacagcaaaaatgatcaacaaaaacaactcccagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccatccaaaatctcgat |
5437413 |
T |
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| Q |
101 |
tcaaatgatgtatggaacaatactgtctgcaaacagatgccgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatg |
200 |
Q |
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| T |
5437412 |
tcaaatgatgtatggaacaatactgtctgcaaacaaatgctgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatg |
5437313 |
T |
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| Q |
201 |
acactgagccatcaagtaagtttt |
224 |
Q |
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| T |
5437312 |
acactgagccatcaagtaagtttt |
5437289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 5629648 - 5629859
Alignment:
| Q |
13 |
caacaatgatcaacaaaaacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgta |
112 |
Q |
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| T |
5629648 |
caacaatgatcaacaacaagaatcctcagaatcatcaccattccttggaagcatcaaaaacctctacaaaaccgtacaaaccctcactccaaacgatgtt |
5629747 |
T |
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| Q |
113 |
tggaacaatactgtctgcaaacagatgccgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccat |
212 |
Q |
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| T |
5629748 |
tggaacaaccctgtctacaaacaaatgctattgaatcccaagaatccatgtgaatcactgtgcatgaacctgttcatgaatatcgatgacactgaatcat |
5629847 |
T |
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| Q |
213 |
caagtaagtttt |
224 |
Q |
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| T |
5629848 |
caagtaagtttt |
5629859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 5487260 - 5487417
Alignment:
| Q |
41 |
gaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgtatggaacaatactgtctgcaaacagatgc |
140 |
Q |
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| T |
5487260 |
gaatcatcaccgttccttgaaaacatcaaacacctctaccaaaccgtccaaaacctaaactcagacgatgtttggaacaacaatgtatgcaaacaaatgc |
5487359 |
T |
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| Q |
141 |
cgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttga |
198 |
Q |
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| T |
5487360 |
tgctgcatcccaggaatccctgtgaagcattgtgcgcgaagttgttcttgaatgttga |
5487417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 224
Target Start/End: Complemental strand, 5447700 - 5447517
Alignment:
| Q |
41 |
gaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgtatggaacaatactgtctgcaaacagatgc |
140 |
Q |
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| T |
5447700 |
gaatcatcaccattccttgacaacatcaaatacatctaccaaactgtccaagacataacttcaaatgatgtttggaacaaccctttatgtaagcaaatgt |
5447601 |
T |
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| Q |
141 |
cgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccatcaagtaagtttt |
224 |
Q |
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| T |
5447600 |
tgctgcatccgaggaatccatgtgaatcacagtgcatgaagttgttcttgaatattgatgacactgaaccatcaagtaagtttt |
5447517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 224
Target Start/End: Original strand, 5508489 - 5508683
Alignment:
| Q |
30 |
aacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaatgatgtatggaacaatactgtctg |
129 |
Q |
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|||||||| || |||||||||||||| ||||||||||||||||||| |||| ||||| ||||| ||| | || | || || |||||||| | | || |
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| T |
5508489 |
aacaactctcaaaatcatcaccattctttgaaaacatcaaaaacctttaccaaaccgtccaaaacctcaactcggacgaggtttggaacaaccccttatg |
5508588 |
T |
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| Q |
130 |
caaacagatgccgttgcatcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccatcaagtaagtttt |
224 |
Q |
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| T |
5508589 |
taagcaaatgttgctgcatccgaggaattcatgtgaatcactgtgcatgaagttgtacttgaatattgatgattctgaaccatcaagtaagtttt |
5508683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 5458664 - 5458587
Alignment:
| Q |
147 |
atcccaggaatccctgtgaagcattgtgcatgaagctgttcttgaatgttgatgacactgagccatcaagtaagtttt |
224 |
Q |
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| T |
5458664 |
atcccaggaatccatgtgaatctctttgcatgaacctgttcttgaatgttgataacagtgagccatcaagtaagtttt |
5458587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 5981373 - 5981213
Alignment:
| Q |
7 |
caacagcaacaatgatcaacaaaaacaactcacagaatcatcaccattccttgaaaacatcaaaaacctctaccgtaccgtacaaaatctcgattcaaat |
106 |
Q |
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| T |
5981373 |
caacaacaacaatgatcaacaacaagaatcctcagaatcatcaccattccctggaaacatcaaaaacctctatgaaagtgtacaaaccctcgctccaaat |
5981274 |
T |
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| Q |
107 |
gatgtatggaacaatactgtctgcaaacagatgccgttgcatcccaggaatccctgtgaag |
167 |
Q |
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| T |
5981273 |
gatgtttggaacaaccctgtatgcaaacaaatgttgttgaatccaaagaatccatgtgaag |
5981213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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