View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_7 (Length: 574)
Name: NF16732_low_7
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 562
Target Start/End: Complemental strand, 54972187 - 54971653
Alignment:
| Q |
13 |
aattattttttatctaagagtgcttgttctgtttcaggttcttgcagcaactcaaactccaggggagcaaggtaaaaagtggtttcaaggcactgctgat |
112 |
Q |
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| T |
54972187 |
aattatcttttatctaagagtgcttgttctgtttcaggttcttgcagcaactcaaactccaggggagcaaggtaaaaagtggtttcaaggcactgctgat |
54972088 |
T |
|
| Q |
113 |
gctgtgcggcagttccactggctctttgaggtatttattagcctaaagcaatcaagaaaaccacaaaatataagttgtagctttttctttaatgcaggtt |
212 |
Q |
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| T |
54972087 |
gctgtacggcagttccactggctctttgaggtatttattagcctaaagcaatcaagaaaaccacaaaatataagttgtagctttttctttaatgcaggtt |
54971988 |
T |
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| Q |
213 |
atgctgtttaatattatggaccaataagcaatttagtgtgatgatctaaactatgtttttcatgaagtaggatcccaggagcaaggatattgaagatgtc |
312 |
Q |
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| T |
54971987 |
atg---------------gaccaataagcaattaagtgtgatgatctaaactatgtttttcatgaagtaggatcccaggagcaaggatattgaggatgtt |
54971903 |
T |
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| Q |
313 |
ttgattctttctggggatcacctctaccgtatggactatatggactttgttaaagtagggatcatgtcaaccaattaagcaatattctctctttcagttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54971902 |
ttgattctttctggggatcacctctaccgtatggactatatggactttgttaaagtagggatcatgtcaaccaattaagcaatattctctctttcagttc |
54971803 |
T |
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| Q |
413 |
agtagattaattcaaattattgactcttaagacgttttccaggatcatcgagagagcggtgcagatatcactctttcttgtctgccaatggatgacaggt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54971802 |
agtagattaattcaaattattgactcttaagacgttttccaggatcatcgagagagcggtgcagatatcactctttcttgtctgccaatggatgacaggt |
54971703 |
T |
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| Q |
513 |
aagttacttccccgaagtagtaagattcatgtcatttagtgttcatctct |
562 |
Q |
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| T |
54971702 |
aagttacttccccgaagtagtaagattcatgtcatttagtgttcatctct |
54971653 |
T |
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