View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_8 (Length: 558)
Name: NF16732_low_8
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 378
Target Start/End: Original strand, 34016545 - 34016918
Alignment:
| Q |
22 |
caggatacctggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatg-----------------ttaaataac |
104 |
Q |
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| T |
34016545 |
caggatacctggtccccaaaagattagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgctaaataacaatatacattaaataac |
34016644 |
T |
|
| Q |
105 |
aatttaacacaaaagataacaaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagataca |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34016645 |
aatttaacacaaaagataacaaatgaattgaaaacaacttctgatttgcttttgaacacacacatactgagacgaatgattgattaaagcagtagataca |
34016744 |
T |
|
| Q |
205 |
tacgggactaccgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatata |
304 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34016745 |
tacgggactactgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatata |
34016844 |
T |
|
| Q |
305 |
gaaaatgatatcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016845 |
gaaaatgatatcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
34016918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 378
Target Start/End: Complemental strand, 34024044 - 34023658
Alignment:
| Q |
22 |
caggatacctggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatg-----------------ttaaataac |
104 |
Q |
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| T |
34024044 |
caggatacctggtccccaaaagagtagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgctaaataacaatatacattaaataac |
34023945 |
T |
|
| Q |
105 |
aatttaacacaaaagataacaaa----------tgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagc |
194 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||| ||| |||||| |||||||||||||| |
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| T |
34023944 |
aatttaacacaaaagataacaaaagcattgaaatgaattgaaaataacttctgatttgctttcgaacacacacgcacaaagacgattgattgattaaagc |
34023845 |
T |
|
| Q |
195 |
agtagatacatacgggactaccgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaa |
294 |
Q |
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| T |
34023844 |
agtagatacatacgggactactgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaa |
34023745 |
T |
|
| Q |
295 |
tgtaa--atatagaaaatgatatcttcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
378 |
Q |
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||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34023744 |
tgtaaatatatagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34023658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 376 - 544
Target Start/End: Original strand, 34018061 - 34018229
Alignment:
| Q |
376 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattcatactgataccgaacttcgcccggttgaaa |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
34018061 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattgatactgataccgaacttcgccctgttgaaa |
34018160 |
T |
|
| Q |
476 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
544 |
Q |
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| T |
34018161 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
34018229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 125 - 378
Target Start/End: Complemental strand, 34031153 - 34030894
Alignment:
| Q |
125 |
aaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggactaccgcagcatc |
224 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34031153 |
aaatgaattgaaaacaacttctgatttgcttttgaacacacacacacaga--cgaatgattgattaaagcagtagatacatacgggactactgcagcatc |
34031056 |
T |
|
| Q |
225 |
agcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaa-------tatagaaaatgatatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||| |
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| T |
34031055 |
agcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaatagcaaggaaatgtaaagataggcgatagcaaatggtatct |
34030956 |
T |
|
| Q |
318 |
tcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
378 |
Q |
| |
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|||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34030955 |
tcaaaaatatctgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34030894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 376 - 544
Target Start/End: Original strand, 34027861 - 34028029
Alignment:
| Q |
376 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattcatactgataccgaacttcgcccggttgaaa |
475 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||| | ||||| |||| |||||||||||||||| || |
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| T |
34027861 |
cctaaactacccctaggcactgtcataactgattctccttcttttctttccgtgatcaattccaccactgatactcatactgaacttcgcccggttgtaa |
34027960 |
T |
|
| Q |
476 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
544 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34027961 |
caagtcaatcagatacagcagcaatcctcttctcatccggaacaacgggacgagtcaaaggagtattat |
34028029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 34031354 - 34031279
Alignment:
| Q |
22 |
caggatacctggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgttaaa |
100 |
Q |
| |
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||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||| || | |||||||||||||||| |
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| T |
34031354 |
caggatacctggtccccaaaagattagtagtagatttagtgaaccttct---tattaaacggtcatgtactatgttaaa |
34031279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 127
Target Start/End: Complemental strand, 34031239 - 34031208
Alignment:
| Q |
96 |
ttaaataacaatttaacacaaaagataacaaa |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
34031239 |
ttaaataacaatttaacacaaaagataacaaa |
34031208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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