View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16732_low_9 (Length: 557)
Name: NF16732_low_9
Description: NF16732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16732_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 44391014 - 44390462
Alignment:
| Q |
1 |
aacaatactcgttttattcaaatgtttggagaaagttgcatcgacattacatttaaagaaaactctttgtgggcgttgtcacctaactagagttgtaaca |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44391014 |
aacaatgctcgttttattcaaatgtttggagaaagttgtatcgacattacatttaaagaaaactctttgccggcgttgtcacctaactagagttgtaaca |
44390915 |
T |
|
| Q |
101 |
accatcgttgaagtatagggattacgaatcatacctaatgcaccttgcctttatgttgttgtagctatcgtttgatcatcgcaggaagtttgttgagttg |
200 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44390914 |
accatcattgaagtatagggattacgaagcatacctaatgcaccttgcctttatgttgttgtagctatcgtttgatcatcgcaggaagtttgttgagttg |
44390815 |
T |
|
| Q |
201 |
gtaccgtgactagctgccaaaatagtggcattagctgaaacacaatcctctattaggggacaggtgcgatcaaggacctgaacacaagattatgagacat |
300 |
Q |
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| T |
44390814 |
gtaccatgactagctgccaaaatagtggcattagctgaaacacaatcctctattaggtgacaggtgtgatcaaggacctgaacacaagattatgagacat |
44390715 |
T |
|
| Q |
301 |
cttgccagagcttgaggtttctatttcaatatgctccatagcacaacaacaaaat----------ctcttgtaataactgatgtaacaattcgaaaaata |
390 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
44390714 |
cttgccagagcttgaggtttctagttcaatatgctccatagcacaacaacaaaatgttgagaaagctcttgtaatagctgatgtaacaattcgaaaaata |
44390615 |
T |
|
| Q |
391 |
gtgtcaaccattgagttcttttcgatgaac----------ctcaaagtccattcatacgccaaacctgcacaataaaaaggacattcgaagcaaatacgg |
480 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
44390614 |
gtgtcaaccattgagttcttttcgatgaacgccttatggactcaaagtccattcctacgccaaacctgcacagtaaaaagaacatttgaagcaaatacgg |
44390515 |
T |
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| Q |
481 |
gcaaggtccttattaaaaccatcacaacttacatagtttgtaggacattgcac |
533 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44390514 |
gcaaggtccttattagaaccatcacaacttacatagtttgtaggacattgcac |
44390462 |
T |
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