View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_high_11 (Length: 329)
Name: NF16733_high_11
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 87 - 311
Target Start/End: Original strand, 47944899 - 47945123
Alignment:
| Q |
87 |
catatcattaacaagattagagcaactaatcgccagacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaaccgcaaacacc |
186 |
Q |
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| T |
47944899 |
catatcatcaacaagattagagcaactaatcgccatacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaaccgcaaacacc |
47944998 |
T |
|
| Q |
187 |
aacagcttcaaatcactaacatcatcaccaagcgcttccttaataaccctcttcacgaaatcaggttctggattattctttacagccatcgtcatcgccg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47944999 |
aacagcttcaaatcactaacatcatcaccaagcgcttccttaataaccctcttcacgaaatcaggttctggattattctttacagccatcgtcatcgccg |
47945098 |
T |
|
| Q |
287 |
tcgccgcctcatcagacccatcaac |
311 |
Q |
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| T |
47945099 |
tcgccgcctcatcagacccatcaac |
47945123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 47944801 - 47944857
Alignment:
| Q |
10 |
tgagatgaaccattcgtaagaatctcaggaagagtatacctcaaagatatcattgat |
66 |
Q |
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| T |
47944801 |
tgagatgaaccattggtaagaatctcaggaagagtatacctcaaagatatcattgat |
47944857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 6133820 - 6133667
Alignment:
| Q |
99 |
aagattagagcaactaatcgccagacccgaaacctcgtccacacgaacaaacccagattcaagaataacagcatgaaccgcaaacaccaacagcttcaaa |
198 |
Q |
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| T |
6133820 |
aagatgagaggaactaatcttcacacccgaaacgcgatccacacgaataaaccctgattcaagaataaaagcatgaactgcaaataccagtagtttgaaa |
6133721 |
T |
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| Q |
199 |
tcactaacatcatcaccaagcgcttccttaataaccctcttcacgaaatcaggt |
252 |
Q |
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| T |
6133720 |
tcgctaacgtcatcaccaagcgcttctctaagcacccttttcacaaaatcaggt |
6133667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 6133897 - 6133842
Alignment:
| Q |
10 |
tgagatgaaccattcgtaagaatctcaggaagagtatacctcaaagatatcattga |
65 |
Q |
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| T |
6133897 |
tgaggtgaaccattagtaagaatctcaggaagagtatacctcaaacatatcattga |
6133842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 20600077 - 20600022
Alignment:
| Q |
10 |
tgagatgaaccattcgtaagaatctcaggaagagtatacctcaaagatatcattga |
65 |
Q |
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| T |
20600077 |
tgagatgaaccattagtaagaatctcaggaagagtatacctcaaggatatcattga |
20600022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 20599963 - 20599875
Alignment:
| Q |
136 |
tccacacgaacaaacccagattcaagaataacagcatgaaccgcaaacaccaacagcttcaaatcactaacatcatcaccaagcgcttc |
224 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||| ||||| |||| || || ||||| ||||| || || ||||| ||||| |
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| T |
20599963 |
tccacacgaacaaaccctgattcaagaataaaagcatgaacagcaaataccagtagtttgaaatcgctaacgtcgtcgccaagtgcttc |
20599875 |
T |
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