View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_high_13 (Length: 297)
Name: NF16733_high_13
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 39744860 - 39745142
Alignment:
| Q |
1 |
cattaaccaaaggatgcattgccaactcctagcaggcctaattcaccgtcgtcaagttctaaggctaggcgccgtctttgcttcagcatttctaagagca |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39744860 |
cattaaccaaagcatgcattgccaactcctagcaggcctaattcaccgtcgtcaagttctaaggctaggtgccgtctttgcttcagcatttctaagagca |
39744959 |
T |
|
| Q |
101 |
atttcatttcttggacgtaattggagaaaactatgtaatgacataagaaatggataattaagttcctttataacagacccttcatgtcgttcatcgatgt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39744960 |
atttcatttcttgaacgtaattggagaaaactatgtgatgacataagaaatggacaattaaattcctttataacagacccttcatgtcgttcatcgatgt |
39745059 |
T |
|
| Q |
201 |
ctacactactttcatctcctgatccttgtcttgctgatgaaatcagtaaaatatgtagccaaaagtgttggaagggaattctg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39745060 |
ctacactactttcatctcctgatccttgtcttgctgatgaaatcagtaaaatctgtagccaaaagtgttggaagggaattctg |
39745142 |
T |
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