View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_high_14 (Length: 289)
Name: NF16733_high_14
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_high_14 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: scaffold0586 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 10085 - 10266
Alignment:
| Q |
18 |
ctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaactt |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| || ||||||||||||| ||||||||||||||||| | |||||| |
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| T |
10085 |
ctcataatctcaatcattaaatacattgtgtacttggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaagcttagcaactt |
10184 |
T |
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| Q |
118 |
gataatgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttg |
199 |
Q |
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| T |
10185 |
gatagtgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttg |
10266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 22902386 - 22902563
Alignment:
| Q |
48 |
tacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaacttgataatgaaaatctgcaagatgtggtacat |
147 |
Q |
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| T |
22902386 |
tacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaatttgatagtgaaaatctgtaagatgtggtacat |
22902485 |
T |
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| Q |
148 |
aatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttgacattcttttgttttttccatcatga |
225 |
Q |
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| T |
22902486 |
aatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttgacattcttttgttttttccatcatga |
22902563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 22894299 - 22894338
Alignment:
| Q |
18 |
ctcataatctcaatcattaaatacattgtgtacctggaac |
57 |
Q |
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| T |
22894299 |
ctcataatctcaatcattaaatacattgtgtacctggaac |
22894338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 43 - 213
Target Start/End: Original strand, 26662125 - 26662295
Alignment:
| Q |
43 |
ttgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaacttgataatgaaaatctgcaagatgtgg |
142 |
Q |
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| T |
26662125 |
ttgtgtatctagaaccatgtagccataggatacatcaactgagctcctagttgtattgttaaagcttagtaacttgatagtgaaaatctgcaagatgtgg |
26662224 |
T |
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| Q |
143 |
tacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttgacattcttttgttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |
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| T |
26662225 |
tacataatctaagtcaagtagtatgatgttcaatgttacatctttgtgcataatttgacattcttttgttt |
26662295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 26661799 - 26661836
Alignment:
| Q |
243 |
gttagagacaacttctttttattaacccaccttcttct |
280 |
Q |
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|||||||||||||| |||||||||| |||||||||||| |
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| T |
26661799 |
gttagagacaacttgtttttattaaaccaccttcttct |
26661836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 32717480 - 32717339
Alignment:
| Q |
18 |
ctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaactt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || ||| ||||||||| ||||||||||||||||| |||||||| |
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| T |
32717480 |
ctcataatctcaatcattaaatacattgtgtacctggaaccgtgtagccataggatacaacaattgagctcctagttgtattgttaaagcttaacaactt |
32717381 |
T |
|
| Q |
118 |
gataatgaaaatctgcaagatgtggtacataatctaagtcaa |
159 |
Q |
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| T |
32717380 |
gatagtgagaatatgcaagatgtggtacataatctaagtcaa |
32717339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 10638132 - 10638272
Alignment:
| Q |
18 |
ctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaactt |
117 |
Q |
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|||||||||||||||||||| | |||||||||||||||||| ||||||| |||||| || ||||||||||||| |||||||||||||| || | ||| || |
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| T |
10638132 |
ctcataatctcaatcattaa-tgcattgtgtacctggaaccgtgtagccataggatacaacaactgagctcctagttgtattgttaaaacttagcaattt |
10638230 |
T |
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| Q |
118 |
gataatgaaaatctgcaagatgtggtacataatctaagtcaa |
159 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10638231 |
gatagtgaaaatctgcaagatgtggtacataatctaagtcaa |
10638272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 19702429 - 19702542
Alignment:
| Q |
113 |
aacttgataatgaaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatttgac-attcttttgt |
211 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
19702429 |
aacttgatagtgaaaatctgcaagatgtggtacataatctaagacaagtagtatgatgttcaatgttatatctctgtgcacaatttggcaattcttttgt |
19702528 |
T |
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| Q |
212 |
tttttccatcatga |
225 |
Q |
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|||||||||||||| |
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| T |
19702529 |
tttttccatcatga |
19702542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 19701657 - 19701756
Alignment:
| Q |
18 |
ctcataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaactt |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||||| ||||||||||||||||| | |||||| |
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| T |
19701657 |
ctcaaaatctcaatcattaaatacattgtgtacctggaaccatgtagtaatagcatacaacaactgagctcctagttgtattgttaaagcttagcaactt |
19701756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 21481694 - 21481755
Alignment:
| Q |
219 |
atcatgaattgatgcaaaacaattgttagagacaacttctttttattaacccaccttcttct |
280 |
Q |
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|
| T |
21481694 |
atcatgaatcaatgcaaaaaaaagtttagagacaacttgtttttattaacccaccttcttct |
21481755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 38935407 - 38935585
Alignment:
| Q |
21 |
ataatctcaatcattaaatacattgtgtacctggaaccatgtagccgtaggatccaccaactgagctcctggttgtattgttaaagctcaacaacttgat |
120 |
Q |
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|||||||||||| |||||| ||||||||||||||| |||||||||| |||||||| |||||||| ||| || | ||||||| || | | || ||| |
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| T |
38935407 |
ataatctcaatcgttaaatgcattgtgtacctggagccatgtagccataggatccggcaactgaggtccaagtcgaattgttagagtttagcagctttgc |
38935506 |
T |
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| Q |
121 |
aatg--aaaatctgcaagatgtggtacataatctaagtcaagtagtatgatgttcaatgttatatctctgtgcacaatt |
197 |
Q |
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| || ||||||||||||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
38935507 |
agtgccaaaatctgcaagatgaggtacataatctgagtcaagtagtatgttattcaatgttatatctctgtgcacaatt |
38935585 |
T |
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