View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_high_4 (Length: 438)
Name: NF16733_high_4
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_high_4 |
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| [»] scaffold0450 (2 HSPs) |
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Alignment Details
Target: scaffold0450 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 10494 - 10112
Alignment:
| Q |
11 |
cacagaggatgagattccagcttgaggatcaatattatctccatctttatgtaactggtgaagtgaacaaatttaggtcaaatacttttaataaaattcc |
110 |
Q |
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| T |
10494 |
cacagaggatgaaattccagcttgaggatcgatattatctccatctttatgtaactggtgaagtgaacaaatttaggtcaaatagttttaataaaattcc |
10395 |
T |
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| Q |
111 |
ttttcgataataaaatcttttcgataatgacattaccttctcaaggggttgcacatcttgatagaaattaaagaggtcggaattcagaagtccacttgca |
210 |
Q |
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| T |
10394 |
ttttcgataataacatcttttcgataatgacattaccttctcaaggggttgcacatcttgatagaaattaaagaggtcagaattcagaagaagacttgca |
10295 |
T |
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| Q |
211 |
tcattgttctcattcatctgattcaagacaaaaaatatgtcagtaacattaaaaataatttttggtgcgcgcacattacgtgtgtgtctatataccaa-- |
308 |
Q |
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| T |
10294 |
tcattgttctcattcatctgattcaagacaaaaaatatgtcagtaacattaaaaataatttatggtgcgcgcacattacatgtgtgtctatataccaaat |
10195 |
T |
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| Q |
309 |
------atattgtttgcagacctcattgatggaattagcattcttatggtgttcctcattttcaacagcagcctttgatttat |
385 |
Q |
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| T |
10194 |
gtttctatattgtttgcatacctcattgatggaattagcattcttatggtgttcctcattttcaacagcagcctttgatttat |
10112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 10107 - 10074
Alignment:
| Q |
405 |
ctcagaagcatttactccattagcctctgaaact |
438 |
Q |
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| T |
10107 |
ctcagaagcatttactccattagcctctgaaact |
10074 |
T |
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