View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_high_5 (Length: 437)

Name: NF16733_high_5
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_high_5
NF16733_high_5
[»] scaffold0421 (1 HSPs)
scaffold0421 (1-428)||(4564-4993)
[»] chr2 (5 HSPs)
chr2 (1-419)||(15930566-15930999)
chr2 (153-256)||(38088778-38088879)
chr2 (359-419)||(13067192-13067252)
chr2 (328-419)||(40915479-40915570)
chr2 (370-419)||(4814606-4814654)
[»] chr5 (3 HSPs)
chr5 (336-419)||(29632607-29632690)
chr5 (328-419)||(21012015-21012106)
chr5 (328-419)||(21654550-21654641)
[»] chr4 (4 HSPs)
chr4 (328-419)||(42998643-42998734)
chr4 (328-419)||(42999236-42999327)
chr4 (370-413)||(43605638-43605681)
chr4 (328-419)||(50232995-50233086)
[»] chr8 (1 HSPs)
chr8 (343-419)||(5242689-5242765)
[»] chr1 (3 HSPs)
chr1 (359-419)||(48538559-48538619)
chr1 (328-419)||(24535406-24535497)
chr1 (328-419)||(39179967-39180058)
[»] chr3 (10 HSPs)
chr3 (328-419)||(32793233-32793324)
chr3 (328-419)||(50833606-50833697)
chr3 (328-419)||(50842156-50842247)
chr3 (345-419)||(50833828-50833902)
chr3 (345-419)||(50841951-50842025)
chr3 (370-419)||(50833763-50833812)
chr3 (370-419)||(50842041-50842090)
chr3 (348-419)||(48761952-48762023)
chr3 (374-419)||(1273700-1273745)
chr3 (348-413)||(16980976-16981041)
[»] scaffold0246 (1 HSPs)
scaffold0246 (363-418)||(11383-11438)
[»] chr7 (3 HSPs)
chr7 (328-419)||(18478633-18478724)
chr7 (364-419)||(18418435-18418490)
chr7 (369-419)||(23485483-23485532)
[»] chr6 (2 HSPs)
chr6 (348-419)||(5169674-5169745)
chr6 (336-419)||(7015468-7015551)
[»] scaffold1598 (1 HSPs)
scaffold1598 (348-419)||(892-963)


Alignment Details
Target: scaffold0421 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 4993 - 4564
Alignment:
Q  1 agatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgttta--atatataaaatggagcttttattgatacttgcatgtttgctt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  4993 agatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgtttataatatataaaatggagcttttattgatacttgcatgtttgctt 4894  T
Q  99 tgaaaacatgcatgctcgtgaccttgagccatgtgctctagttagtagctcaagcatggataattggaaattcaaaatgcaaagaatttaaaaggctata 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4893 tgaaaacatgcatgctcgtgaccttgagccatgtgctctagttagtagctcaagcatggataattggaaattcaaaatgcaaagaatttaaaaggctata 4794  T
Q  199 atgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggtttgatt--nnnnnnnnnttcaaattcaaacagccaaatactttgaaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||    
T  4793 atgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggtttgattccaaaaaaaaattcaaattcaaacagccaaatactttgaaat 4694  T
Q  297 tcaaatagtggaattttgaagggannnnnnnagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaa 396  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4693 tcaaatagtggaattttgaaggga-ttttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagagttaagtgtttgcaaa 4595  T
Q  397 cctaataacattaaggaataaggtgatgatgt 428  Q
    ||||||||||||||||||||||| ||||||||    
T  4594 cctaataacattaaggaataagg-gatgatgt 4564  T

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Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 15930566 - 15930999
Alignment:
Q  1 agatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgttta--atatataaaatggagcttttattgatacttgcatgtttgctt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  15930566 agatacagtggtctaacattaatatagtgttagtaaaaagtttaatagagtgtttataatatataaaatggagcttttattgatacttgcatgtttgctt 15930665  T
Q  99 tgaaaacatgcatgctcgtgaccttgagccatgtgctctagttagtagctcaagcatggataattggaaattcaaaatgcaaagaatttaaaaggctata 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15930666 tgaaaacatgcatgctcgtgaccttgagccatgtgctgtagttagtagctcaagcatggataattggaaattcaaaatgcaaagaatttaaaaggctata 15930765  T
Q  199 atgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggtttgatt--nnnnnnnnnttcaaa------------ttcaaacagccaa 284  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||            |||||||||||||    
T  15930766 atgtattatggttaacaacatattttagtaaatgccaccgaattaataaggtttgattccaaaaaaaaattcaaattcaaattcaaattcaaacagccaa 15930865  T
Q  285 atactttgaaattcaaatagtggaattttgaagggannnnnnnagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggtta 384  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15930866 atactttgaaattcaaatagtggaattttgaaggga-ttttttagggttagcactaagaacaattaatgcattggttttagagggaaatttttagggtta 15930964  T
Q  385 agtgtttgcaaacctaataacattaaggaataagg 419  Q
    | |||||||||||||||||||||||||||||||||    
T  15930965 aatgtttgcaaacctaataacattaaggaataagg 15930999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 153 - 256
Target Start/End: Original strand, 38088778 - 38088879
Alignment:
Q  153 catggataattggaaattcaaaatgcaaagaatttaaaaggctataatgtatcatggttaacaacatattttagtaaatgccaccgaattaataaggttt 252  Q
    ||||||||||| ||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  38088778 catggataatttgaaattcaaaatgcaaagaatttaaaatgtta--atgtatcacggttaacaacatactttagttaatgccaccgaattaataaggttt 38088875  T
Q  253 gatt 256  Q
    ||||    
T  38088876 gatt 38088879  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 13067192 - 13067252
Alignment:
Q  359 gttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  13067192 gttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 13067252  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 40915479 - 40915570
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| |||||||| |||||||||||||||| |||| ||||||| ||||||||||| |||||    
T  40915479 agggttaacactaacaacaattaatacaacattttgagagggaattttttagggttaagtgattgctaacctaacaacattaaggagtaagg 40915570  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 4814654 - 4814606
Alignment:
Q  370 aaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||| ||||||||||||||||||| |||||||||| |||||||| |||||    
T  4814654 aaatctttagggttaagtgtttgc-aacctaataaaattaaggagtaagg 4814606  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 29632607 - 29632690
Alignment:
Q  336 cactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29632607 cactaacaacaattaatgcattagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaagg 29632690  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 21012015 - 21012106
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  21012015 agggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 21012106  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 21654641 - 21654550
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| || |||||||||||  | ||||||||||||  | ||||||| |||||||||| |||||||||||||||||| |||||    
T  21654641 agggttaacactaacaataattaatgcatcagatttagagggaaaaatgtagggtttagtgtttgcacacctaataacattaaggagtaagg 21654550  T

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Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 42998643 - 42998734
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  42998643 agggttaacactaacaacaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagg 42998734  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 42999236 - 42999327
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| | ||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  42999236 agggttaacactaacagcaattaatgcataagatttagagggaaatttttagggttaagtgtttgcagacctaataacattaaggagtaagg 42999327  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 43605638 - 43605681
Alignment:
Q  370 aaatttttagggttaagtgtttgcaaacctaataacattaagga 413  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  43605638 aaatttttagggttaattgtttgcaaacctaataacattaagga 43605681  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 50232995 - 50233086
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| || | |||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  50232995 agggttaacactaacaacaattaatacaacattttgagcgagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 50233086  T

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Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 343 - 419
Target Start/End: Original strand, 5242689 - 5242765
Alignment:
Q  343 aacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5242689 aacaattaatgcaatagatttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggagtaagg 5242765  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 48538619 - 48538559
Alignment:
Q  359 gttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  48538619 gttttagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 48538559  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 24535406 - 24535497
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| |||||||||||||| |||||||||| |||| ||||||||||||||||||| |||||    
T  24535406 agggttaacactaacaacaattaatacaacattttgagagggaaattttttgggttaagtgattgctaacctaataacattaaggagtaagg 24535497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 39180058 - 39179967
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| ||| || |||| ||||||||   | |||||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||    
T  39180058 agggttatcaccaacaacatttaatgcaaaagatttagagggaaattattagggtttagtggttgcaaacctaataacattaaggagtaagg 39179967  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 32793233 - 32793324
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  32793233 agggttaacactaacaacaattaatacaacattttgagagggaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 32793324  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Original strand, 50833606 - 50833697
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| |||| |||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  50833606 agggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 50833697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 50842247 - 50842156
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| |||||| |||||||||| ||    ||| |||| |||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  50842247 agggttaacactaacaacaattaatacaacattttgagagagaaatttttagggttaagtgattgctaacctaataacattaaggagtaagg 50842156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 50833902 - 50833828
Alignment:
Q  345 caattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||| | | ||| |||  ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  50833902 caattaatgcaatagatttggagccaaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagg 50833828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 50841951 - 50842025
Alignment:
Q  345 caattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||| | | ||| |||  ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  50841951 caattaatgcaatagatttggagccaaatttttagggttaagtgtttgcaaacctaataacattaacgagtaagg 50842025  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 50833812 - 50833763
Alignment:
Q  370 aaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  50833812 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagg 50833763  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 50842041 - 50842090
Alignment:
Q  370 aaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||    
T  50842041 aaatttttagggttaagtgtttgcaaacctaataacattaaagagtaagg 50842090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 48762023 - 48761952
Alignment:
Q  348 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||||| | | |||||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||    
T  48762023 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 48761952  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 1273745 - 1273700
Alignment:
Q  374 ttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||||||| |||| ||||||||||||||||||| | ||||||||    
T  1273745 ttttagggtttagtgattgcaaacctaataacatttaagaataagg 1273700  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 16981041 - 16980976
Alignment:
Q  348 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaagga 413  Q
    |||||||||  | |||||||  || ||||||||||||||   ||||||||||||||||||||||||    
T  16981041 ttaatgcatgagatttagagaaaattttttagggttaagcaattgcaaacctaataacattaagga 16980976  T

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Target: scaffold0246 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 11438 - 11383
Alignment:
Q  363 tagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataag 418  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||    
T  11438 tagagggaaatttttaaggttaagtgtttgaaaacctaataacattaaggagtaag 11383  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 419
Target Start/End: Complemental strand, 18478724 - 18478633
Alignment:
Q  328 agggttagcactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||| ||| || |||| |||||||| | | |||||||||||||| |||||||| |||  |||||||||||||||||||||||| |||||    
T  18478724 agggttatcaccaacaacatttaatgcaatagatttagagggaaattattagggtttagtagttgcaaacctaataacattaaggagtaagg 18478633  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 18418435 - 18418490
Alignment:
Q  364 agagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||||||||||||||||| |||| ||||||| ||||||||||| |||||    
T  18418435 agagggaaatttttagggttaagtgattgctaacctaacaacattaaggagtaagg 18418490  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 23485532 - 23485483
Alignment:
Q  369 gaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| |||||    
T  23485532 gaaatttttagggttaagtgtttgc-aacctaataaaattaaggagtaagg 23485483  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 5169745 - 5169674
Alignment:
Q  348 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||||| | | |||||||||||||| |||||||| |||| ||||||||||||||| |||||||| |||||    
T  5169745 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaggagtaagg 5169674  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 7015551 - 7015468
Alignment:
Q  336 cactaagaacaattaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||| |||| ||||| || | | |||||||||||||  |||||||| |||| |||||||||||||||||||||||| |||||    
T  7015551 cactaacaacatttaatacaatagatttagagggaaataattagggtttagtggttgcaaacctaataacattaaggagtaagg 7015468  T

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Target: scaffold1598 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1598
Description:

Target: scaffold1598; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 419
Target Start/End: Complemental strand, 963 - 892
Alignment:
Q  348 ttaatgcattggttttagagggaaatttttagggttaagtgtttgcaaacctaataacattaaggaataagg 419  Q
    |||||||| | | |||||||||||||| |||||||| |||| ||||||||||||||| ||||| || |||||    
T  963 ttaatgcaatagatttagagggaaattattagggtttagtggttgcaaacctaataatattaaagagtaagg 892  T

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