View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_10 (Length: 365)
Name: NF16733_low_10
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 23 - 362
Target Start/End: Complemental strand, 53557144 - 53556801
Alignment:
| Q |
23 |
tatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtc |
122 |
Q |
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| T |
53557144 |
tatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtc |
53557045 |
T |
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| Q |
123 |
ctttcttcacgttagccttgtcacaacatggagctctacccatcttttttgtattgttaagannnnnnnnnnnnnnnnngaaattaggtttaa-ttctct |
221 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| |
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| T |
53557044 |
ctttcttcacgttagccttgtcacagcatggagctctacccatcttttttgtattattaagatctctctctctctctctgaaattaggtttaatttctct |
53556945 |
T |
|
| Q |
222 |
ccttga---gatgatgatgatggctttgtaagattgttgggaaactacttggaaggaagagaatgatttataggtaagaagaatggctgatgtgatgctt |
318 |
Q |
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| T |
53556944 |
ccttgagatgatgatgatgatggctttgtaagattgttgggaaactacttggaaggaagagaatgatttataggtaagaagaatggctgatgtgatgctt |
53556845 |
T |
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| Q |
319 |
aaaaggacaaaaagtcttgcacacctcaccctttcctttgcttc |
362 |
Q |
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| T |
53556844 |
aaaaggacaaaaagtcttgcacacctcaccctttcctttgcttc |
53556801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 4685489 - 4685341
Alignment:
| Q |
26 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
125 |
Q |
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| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
4685390 |
T |
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| Q |
126 |
tcttcacgttagccttgtcacaacatggagctctacccatcttttttgt |
174 |
Q |
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| T |
4685389 |
tcttcacgtttgctttgtcacaacaaggagctctacccatgtttgttgt |
4685341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 4612012 - 4612088
Alignment:
| Q |
89 |
ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccat |
165 |
Q |
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| T |
4612012 |
ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctcttcccat |
4612088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 5113295 - 5113168
Alignment:
| Q |
38 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag |
137 |
Q |
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| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
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| Q |
138 |
ccttgtcacaacatggagctctacccat |
165 |
Q |
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| T |
5113195 |
ctttgtcacagcaaggagctcttcccat |
5113168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 40820104 - 40820235
Alignment:
| Q |
34 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
133 |
Q |
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|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
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| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
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| Q |
134 |
ttagccttgtcacaacatggagctctacccat |
165 |
Q |
| |
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|| || |||||||| || |||||||| ||||| |
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| T |
40820204 |
tttgctttgtcacagcaaggagctcttcccat |
40820235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 171
Target Start/End: Original strand, 41208793 - 41208920
Alignment:
| Q |
44 |
agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt |
143 |
Q |
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|||| |||||| |||||||||||||||| | | || ||||| || ||| | |||||||||||||||||||| || |||||||| || ||||| |||| |
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| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
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| Q |
144 |
cacaacatggagctctacccatcttttt |
171 |
Q |
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|||| || |||| ||| ||||| ||||| |
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| T |
41208893 |
cacagcaaggagatcttcccattttttt |
41208920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 47847050 - 47847119
Alignment:
| Q |
99 |
catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctctacccatctt |
168 |
Q |
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| T |
47847050 |
catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcacagcaaggtgcccttcccatctt |
47847119 |
T |
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