View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_11 (Length: 364)
Name: NF16733_low_11
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 47944824 - 47944467
Alignment:
| Q |
1 |
gattcttacgaatggttcatctcatgctgtgaatttgaaaattcagactttagggaattttgtgaatgtctatggttcattgtgtgatgatgctgggtca |
100 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47944824 |
gattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttgtgaatgtctatggttcattgtgtgatgatgctgggtca |
47944725 |
T |
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| Q |
101 |
agggtgcatagggtttatttagataaatctagatttgctaagcctttagaattgatgctggaaaattctgaattcaatggtaa------cgatggtggag |
194 |
Q |
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| T |
47944724 |
agggtgcatagggtttatttagataaatctagatttgctaagcctttagaattgatgctggaaaattctgaatttaatggtaattttaacgatgttggag |
47944625 |
T |
|
| Q |
195 |
ataaagtttttgaattgtggaagatagtgaaagatgggcttgcattgccactattaattgatctttgtgataaagctggattagaacttccaccgtgttt |
294 |
Q |
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| T |
47944624 |
ataaagtttttgaattgtggaagatagtgaaagatgggcttgcattgccactattaattgatctttgtgataaagctggattagaacttccaccgtgttt |
47944525 |
T |
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| Q |
295 |
tatgcgtcttccgatggagcttaagctgctgatatttgagtatcttcccggtgatgat |
352 |
Q |
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| T |
47944524 |
tatgcgtcttccgatggagcttaagctgctgatatttgagtatcttcccggtgatgat |
47944467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 20600054 - 20600420
Alignment:
| Q |
1 |
gattcttacgaatggttcatctcatgctgtgaatttgaaaattcagactttagggaattttgtgaatgtctatggttcattgtgtgatgatgctgggtca |
100 |
Q |
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| T |
20600054 |
gattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggcattttgtgaatgtttatggttcattgtatgatgatgttgggtca |
20600153 |
T |
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| Q |
101 |
agggtgcatagggtttatttagataaatctagatttgctaagcctttagaat---tgatgctggaaaattctgaattcaa------tggtaacgatggtg |
191 |
Q |
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|| || |||| ||||||||||||||||| ||||||||| ||||||||||| | || || || ||||||||||| || || ||| | || || |
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| T |
20600154 |
agtgtacatatggtttatttagataaatgtagatttgccaagcctttagagtttctgctgatgtcaaattctgaatctaatgcttgtgttaatgttgatg |
20600253 |
T |
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| Q |
192 |
g------agataaagtttttgaattgtggaagatagtgaaagatgggcttgcattgccactattaattgatctttgtgataaagctggattagaacttcc |
285 |
Q |
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| T |
20600254 |
gtgataaagatgaagttttggaattgtggaagatagtgaacgataggcttgcatttccacttttaattgatctttgtgataaagctggattgattcttcc |
20600353 |
T |
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| Q |
286 |
accgtgttttatgcgtcttccgatggagcttaagctgctgatatttgagtatcttcccggtgatgat |
352 |
Q |
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| T |
20600354 |
accttgttttatgagcctcccaatggaacttaagctcgtaatatttgagtatcttcctggtgatgat |
20600420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 6133874 - 6134237
Alignment:
| Q |
1 |
gattcttacgaatggttcatctcatgctgtgaatttgaaaattcagactttagggaattttgtgaatgtctatggttcattgtgtgatgatgctgggtca |
100 |
Q |
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||||||||| ||||||||| ||||| | ||||||||||||||||||| |||||| |||||||||| || ||||||||||||| |||||||| ||||||| |
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| T |
6133874 |
gattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttgtgaacgtttatggttcattgtatgatgatgttgggtca |
6133973 |
T |
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| Q |
101 |
agggtgcatagggtttatttagataaatctagatttgctaagcctttagaattgatgctggaaaattctgaat------------tcaatggtaacgatg |
188 |
Q |
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| || |||||||||||||||||||||| ||||||| | ||||||||| | || ||||| ||||| ||||| | |||| ||| |||| |
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| T |
6133974 |
aatgtacatagggtttatttagataaatatagattttccaagcctttaaagtttatgctatcaaattttgaatctattgctagttttaatgttaatgatg |
6134073 |
T |
|
| Q |
189 |
gtggagataaagtttttgaattgtggaagatagtgaaagatgggcttgcattgccactattaattgatctttgtgataaagctggattagaacttccacc |
288 |
Q |
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|| | || | |||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||| |
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| T |
6134074 |
atgaaaatgaggtttttgaattgtggaagatagtgaatgataggcttgcattgccacttttaatggatctttgtgataaagctggattgaatcttccacc |
6134173 |
T |
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| Q |
289 |
gtgttttatgcgtcttccgatggagcttaagctgctgatatttgagtatcttcccggtgatgat |
352 |
Q |
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||||||||| | || || ||||| |||||||| | ||||||||||||||||| ||||||||| |
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| T |
6134174 |
atgttttatgagcctcccaatggaacttaagctcttaatatttgagtatcttcctggtgatgat |
6134237 |
T |
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