View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_12 (Length: 353)
Name: NF16733_low_12
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_12 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 16572745 - 16572964
Alignment:
| Q |
15 |
gatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttg |
114 |
Q |
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||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16572745 |
gatgaatgacgagcataatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttg |
16572844 |
T |
|
| Q |
115 |
actgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcaggtggcag |
214 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16572845 |
actgagaaattatccatccttgctaagagtaatgaaagagctacagaagtatgattaggaagtgtcagttggattgcactgccgctccttcaggtggcag |
16572944 |
T |
|
| Q |
215 |
gcgtgaagacatgtcctatt |
234 |
Q |
| |
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|||||||||||||||||||| |
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| T |
16572945 |
gcgtgaagacatgtcctatt |
16572964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 16874621 - 16874845
Alignment:
| Q |
9 |
gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
108 |
Q |
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||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16874621 |
gagtgtgatgaatgatgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaactctctatggtgcaggctttggcgttc |
16874720 |
T |
|
| Q |
109 |
gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcagg |
208 |
Q |
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|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
16874721 |
gaattgactgagaaattatccatccttgctaagagtaatgaaagagctacagaagcatggttaggaagtgtcggttggattgcactgccgctcctacagg |
16874820 |
T |
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| Q |
209 |
tggcaggcgtgaagacatgtcctatt |
234 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
16874821 |
tggcaggcgtgaagac-tgtcctatt |
16874845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 16580760 - 16580980
Alignment:
| Q |
9 |
gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
108 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16580760 |
gagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
16580859 |
T |
|
| Q |
109 |
gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcagg |
208 |
Q |
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|||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
16580860 |
gagttgaccgagaaattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcaga |
16580959 |
T |
|
| Q |
209 |
tggcaggcgtgaagacatgtc |
229 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
16580960 |
tggtaggcgtgaagacatgtc |
16580980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 16614620 - 16614400
Alignment:
| Q |
9 |
gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
108 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16614620 |
gagtgtgatgaattacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
16614521 |
T |
|
| Q |
109 |
gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtgtcagttggattgcactgccgctccttcagg |
208 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
16614520 |
gagttgaccgagaaattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtgtcgggtggattgcactgccactccttcaga |
16614421 |
T |
|
| Q |
209 |
tggcaggcgtgaagacatgtc |
229 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
16614420 |
tggtaggcgtgaagacatgtc |
16614400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 16875234 - 16875309
Alignment:
| Q |
251 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagttacttat |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
16875234 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactccaacgataaacaagttgcttat |
16875309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 16581385 - 16581450
Alignment:
| Q |
251 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16581385 |
tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
16581450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 16613995 - 16613930
Alignment:
| Q |
251 |
tagttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
316 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16613995 |
tagttcaacattaaataacagttcaacattaatctctacgtttaaattaaactctaacgataaaca |
16613930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 321
Target Start/End: Complemental strand, 16976983 - 16976916
Alignment:
| Q |
252 |
agttcaacattatataacagttcaacattaatctctacgtttaaattaaactctaacgataaacaagtta |
321 |
Q |
| |
|
|||||| |||||||||| ||||||||||| | ||||||||| |||||||||| | | |||||||||||| |
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| T |
16976983 |
agttcaccattatataagagttcaacattga--tctacgtttcaattaaactcaagcaataaacaagtta |
16976916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 25 - 173
Target Start/End: Complemental strand, 233427 - 233279
Alignment:
| Q |
25 |
gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat |
124 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||| |
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| T |
233427 |
gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat |
233328 |
T |
|
| Q |
125 |
tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg |
173 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
233327 |
tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg |
233279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 21629507 - 21629732
Alignment:
| Q |
9 |
gagtgagatgaataacgagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttc |
108 |
Q |
| |
|
||||| ||||||| ||||| |||||| | |||||||| ||||||||||||||||| |||||||||||||||| ||| | ||||||||| ||||||||| |
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| T |
21629507 |
gagtgtgatgaatggcgagcttcatgctggctgggatcaaccatctgggtgcattgtattccgaaatgttgaacactcaagggtgcaggccttggcgttc |
21629606 |
T |
|
| Q |
109 |
gagttgactgagaaattatccatccttgcaaagagtaatgaaagagctacagaaggatggttaggaagtg-tcagttggattgcactgccgctccttcag |
207 |
Q |
| |
|
||||||||| | ||| |||| |||||||||||||||||||||||||||||| ||| | ||| ||| || || |||||||| || | ||||| |||||| |
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| T |
21629607 |
gagttgactaataaa-tatctatccttgcaaagagtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcag |
21629705 |
T |
|
| Q |
208 |
gtggcaggcgtgaagacatgtcctatt |
234 |
Q |
| |
|
|||||| || | ||||||||||||||| |
|
|
| T |
21629706 |
gtggcatgcatcaagacatgtcctatt |
21629732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 7392068 - 7392216
Alignment:
| Q |
25 |
gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat |
124 |
Q |
| |
|
|||| ||||||||| |||||||| ||| ||||||||||| | |||||||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||| |
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| T |
7392068 |
gagcttcatgcaagctgggatcaaccaactgggtgcattattttccgaaatgttgaacactcaagggtgcaggctttggcattccagttgactgagaaat |
7392167 |
T |
|
| Q |
125 |
tatccatccttgcaaagagtaatgaaagagctacagaaggatggttagg |
173 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||| | ||||||| |
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| T |
7392168 |
tatctatccttgcagagagtaatgaaagagctacagaagcaaggttagg |
7392216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 48298543 - 48298405
Alignment:
| Q |
25 |
gagcatcatgcaaggtgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaat |
124 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||| | ||| |||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||| |
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| T |
48298543 |
gagcttcatgcaagctgggatcagccaactgggtgcattattttcagaaatgttgaactctcaagggtgcaggctttggcattccagttgactgagaaat |
48298444 |
T |
|
| Q |
125 |
tatccatccttgcaaagagtaatgaaagagctacagaag |
163 |
Q |
| |
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|||| ||||||||| ||||||||||||||||| |||||| |
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| T |
48298443 |
tatctatccttgcagagagtaatgaaagagcttcagaag |
48298405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Complemental strand, 10939 - 10841
Alignment:
| Q |
40 |
tgggatcagccatctgggtgcattgtgttccgaaatgttgaaccctctatggtgcaggctttggcgttcgagttgactgagaaattatccatccttgca |
138 |
Q |
| |
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||||| || |||||||| ||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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| T |
10939 |
tgggaccaaccatctggatgcattgtgttccaaaatgttgaacactcaagggtgcaggctttgtcgttcaagttgactgagaaattatctatccttgca |
10841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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