View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_low_13 (Length: 330)

Name: NF16733_low_13
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_low_13
NF16733_low_13
[»] chr5 (16 HSPs)
chr5 (15-312)||(1163523-1163817)
chr5 (15-293)||(1849919-1850197)
chr5 (15-311)||(3299487-3299804)
chr5 (15-311)||(3392380-3392697)
chr5 (15-146)||(39879768-39879899)
chr5 (15-146)||(40418237-40418368)
chr5 (15-146)||(38987659-38987790)
chr5 (15-146)||(39726372-39726503)
chr5 (15-155)||(39399813-39399953)
chr5 (15-146)||(39168800-39168931)
chr5 (159-307)||(40418417-40418562)
chr5 (196-286)||(38987873-38987963)
chr5 (196-286)||(39726592-39726682)
chr5 (196-286)||(39879988-39880078)
chr5 (214-271)||(39169041-39169098)
chr5 (38-139)||(40102213-40102314)
[»] chr4 (4 HSPs)
chr4 (15-145)||(25912292-25912422)
chr4 (159-279)||(25912122-25912239)
chr4 (73-139)||(44444772-44444838)
chr4 (105-139)||(43996488-43996522)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 1163817 - 1163523
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcg-cacaacttttcaaatcaagactcatcttggtcgtattttaaaac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||| ||||||||||||||||||||||||||    
T  1163817 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaac 1163719  T
Q  114 ctggtgaccatgctcttggttatgacctgtctgctggaggaggtcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcc 213  Q
    | ||||||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163718 ccggtgaccatgctcttggttatgacctgcctga---aggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcc 1163622  T
Q  214 tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccgaaatcc 312  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1163621 tgttcaggataagtgggaatctggttatcaactcttcttaaaagatctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatcc 1163523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 1849919 - 1850197
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||| |||||||||| |||||||||||||    
T  1849919 aatatcgtttagctaatgccatagttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaa 1850018  T
Q  112 acctggtgaccatgctcttggttatgacctgtctgctggaggaggtcccattttgattaccaagattagttttgctaaagaggagaatggtagagttgtt 211  Q
    ||||||||||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850019 acctggtgaccatgctcttggttatgacctgcctga---aggagatcccattttgattaccaagattagttttgctaaagaggagaatggtagagttatt 1850115  T
Q  212 cctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 293  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1850116 cctgttcaggataagtgggaatctgattatcaactcttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 1850197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 3299487 - 3299804
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 111  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  3299487 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3299586  T
Q  112 acctggtgaccatgctcttggttatgacctgtctgctggaggagg------------------tcccattttgattaccaagattagttttgctaaagag 193  Q
    ||| |||||||||||||||||||||||||||||| |||||||||                   | |||||||||| ||||| ||||||| |||  |||||    
T  3299587 acccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagag 3299686  T
Q  194 gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 293  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3299687 gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaa 3299786  T
Q  294 gagcaatctaccgaaatc 311  Q
    ||||||||||||||||||    
T  3299787 gagcaatctaccgaaatc 3299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 3392380 - 3392697
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataat---cgcacaacttttcaaatcaagactcatcttggtcgtattttaaa 111  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||    
T  3392380 aatatcgtttagctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaa 3392479  T
Q  112 acctggtgaccatgctcttggttatgacctgtctgctggaggagg------------------tcccattttgattaccaagattagttttgctaaagag 193  Q
    ||| |||||||||||||||||||||||||||||| |||||||||                   | |||||||||| ||||| ||||||| |||  |||||    
T  3392480 acccggtgaccatgctcttggttatgacctgtcttctggaggagtagatacaaaccttcctgctgccattttgatcaccaaaattagttatgccgaagag 3392579  T
Q  194 gagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttcgaccgaa 293  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  3392580 gagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaaagatctacaacaagacactaaactcctcttcgaccgaa 3392679  T
Q  294 gagcaatctaccgaaatc 311  Q
    ||||||||||||||||||    
T  3392680 gagcaatctaccgaaatc 3392697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 39879768 - 39879899
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  39879768 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacc 39879867  T
Q  115 tggtgaccatgctcttggttatgacctgtctg 146  Q
     |||||||||||||||||||||||||||||||    
T  39879868 cggtgaccatgctcttggttatgacctgtctg 39879899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 40418237 - 40418368
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    ||||| |||||||| ||||  | ||||||||||| ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  40418237 aatattgtttagctgatgctgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacc 40418336  T
Q  115 tggtgaccatgctcttggttatgacctgtctg 146  Q
     |||||||||||||||||||||||||||||||    
T  40418337 cggtgaccatgctcttggttatgacctgtctg 40418368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 38987659 - 38987790
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  38987659 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacc 38987758  T
Q  115 tggtgaccatgctcttggttatgacctgtctg 146  Q
     |||||||||||||||||||||||||||||||    
T  38987759 cggtgaccatgctcttggttatgacctgtctg 38987790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 39726372 - 39726503
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    |||||||||||||| ||||  | ||||||||||| ||||||| ||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  39726372 aatatcgtttagctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacc 39726471  T
Q  115 tggtgaccatgctcttggttatgacctgtctg 146  Q
     |||||||||||||||||||||||||||||||    
T  39726472 cggtgaccatgctcttggttatgacctgtctg 39726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 39399813 - 39399953
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    |||| ||||||||| ||||| | |||||||||||  || || |||||||||||  ||||||||||||||||| |||||||||||||| |||||||||| |    
T  39399813 aataccgtttagctgatgccgtggttgctcgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtcatattttaaaatc 39399912  T
Q  115 tggtgaccatgctcttggttatgacctgtctgctggaggag 155  Q
     |||||| ||||||||||||||||| ||||||  |||||||    
T  39399913 cggtgactatgctcttggttatgacttgtctggaggaggag 39399953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 39168800 - 39168931
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    ||||||| |||||| ||||| | |||||||||||  ||||| |||||||||||  |||||||||||||||||| |||||||| |||| |||||||||| |    
T  39168800 aatatcggttagctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatc 39168899  T
Q  115 tggtgaccatgctcttggttatgacctgtctg 146  Q
     |||||| ||||||||||||||||| ||||||    
T  39168900 cggtgactatgctcttggttatgacttgtctg 39168931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 307
Target Start/End: Original strand, 40418417 - 40418562
Alignment:
Q  159 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaaga 258  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| || |||| ||||||||||||||||||||||||| |||||| || ||    
T  40418417 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatga 40418513  T
Q  259 tttacaacaagaccctaaactcctcttcgaccgaagagcaatctaccga 307  Q
    | ||||||||||| |||||||||||||| ||  |||||||  |||||||    
T  40418514 tctacaacaagacactaaactcctcttcaacgtaagagcagcctaccga 40418562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 38987873 - 38987963
Alignment:
Q  196 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttc 286  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| ||||||    
T  38987873 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 38987963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 39726592 - 39726682
Alignment:
Q  196 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttc 286  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||||||||| |||| ||||||    
T  39726592 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagaccctcaactactcttc 39726682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 39879988 - 39880078
Alignment:
Q  196 gaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagaccctaaactcctcttc 286  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||| || ||| |||||||| || |||||||| |||||    
T  39879988 gaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacactaaactcatcttc 39880078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 39169041 - 39169098
Alignment:
Q  214 tgttcaggataagtgggaatctgattatcaacccttcttaaaagatttacaacaagac 271  Q
    |||| ||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  39169041 tgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagac 39169098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 40102314 - 40102213
Alignment:
Q  38 gttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgaccatgctcttggttatg 137  Q
    ||||||||||| |||||| ||||||| |||  ||| |  ||| | |||||||||||||| |||  | |||| |||  ||||||||||||| |||||||||    
T  40102314 gttgctcgtgtgaaagattttggaaagaatgacacgagatttaatatcaagactcatctgggttatcttttgaaatttggtgaccatgcttttggttatg 40102215  T
Q  138 ac 139  Q
    ||    
T  40102214 ac 40102213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 25912422 - 25912292
Alignment:
Q  15 aatatcgtttagctaatgccatagttgctcgtgtcaaagatattggaaataatcgcacaacttttcaaatcaagactcatcttggtcgtattttaaaacc 114  Q
    |||||||||||||| |||   | ||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||| |||||||    
T  25912422 aatatcgtttagctgatgatgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattctaaaacc 25912323  T
Q  115 tggtgaccatgctcttggttatgacctgtct 145  Q
     | ||||||||||||||||||||||||||||    
T  25912322 cgatgaccatgctcttggttatgacctgtct 25912292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 25912239 - 25912122
Alignment:
Q  159 ccattttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctgattatcaacccttcttaaaaga 258  Q
    |||||||||| ||||||||||||| |||  |||||   ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||  |    
T  25912239 ccattttgatcaccaagattagttatgccgaagag---aatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaatta 25912143  T
Q  259 tttacaacaagaccctaaact 279  Q
    | |||| ||||||||||||||    
T  25912142 tctacagcaagaccctaaact 25912122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 44444838 - 44444772
Alignment:
Q  73 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgaccatgctcttggttatgac 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatgac 44444772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 43996488 - 43996522
Alignment:
Q  105 ttttaaaacctggtgaccatgctcttggttatgac 139  Q
    ||||||| |||||||||||||||||||||||||||    
T  43996488 ttttaaagcctggtgaccatgctcttggttatgac 43996522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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