View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_low_19 (Length: 284)

Name: NF16733_low_19
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_low_19
NF16733_low_19
[»] chr2 (1 HSPs)
chr2 (14-277)||(11812029-11812292)
[»] chr4 (6 HSPs)
chr4 (36-183)||(30028461-30028609)
chr4 (89-255)||(30056398-30056568)
chr4 (42-103)||(37398599-37398660)
chr4 (62-104)||(37538294-37538336)
chr4 (62-104)||(40644451-40644493)
chr4 (58-99)||(8724561-8724602)
[»] chr1 (3 HSPs)
chr1 (50-115)||(24567545-24567610)
chr1 (129-183)||(11682224-11682278)
chr1 (129-182)||(11674752-11674805)
[»] chr3 (1 HSPs)
chr3 (50-103)||(23619212-23619265)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 11812292 - 11812029
Alignment:
Q  14 agagtatgatactagttaagatagtctctccattgtcaccatcctaccatgctagtttctccattgcaccatcctattattgactttaagctaagcaagc 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11812292 agagtatgatacaagttaagatagtctctccattgtcaccatcctaccatgctagtttctccattgcaccatcctattattgactttaagctaagcaagc 11812193  T
Q  114 caatatgcttaacaattccaatttctacaagatcatttttccattgatgcattaattagttctactatttcatcagtaatttggcatctagaattattat 213  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11812192 caatatgcttaacaattccaatttttacaagatcatttttccattgatgcattaattagttctactatttcatcagtaatttggcatctagaattattat 11812093  T
Q  214 aaataaggccaattcctcacgaattctcatcattgaaatatatgaaatctatttccaaataaac 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11812092 aaataaggccaattcctcacgaattctcatcattgaaatatatgaaatctatttccaaataaac 11812029  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 183
Target Start/End: Complemental strand, 30028609 - 30028461
Alignment:
Q  36 agtctctccattgtcaccatcctaccatgctagtttctccattgc-accatcctattattgactttaagctaagcaagccaatatgcttaacaattccaa 134  Q
    ||||||||||||| ||||| ||||  ||||||||||||| ||| | |||| |  ||||| || ||||||| | |||||| | |||| ||  || || |||    
T  30028609 agtctctccattgccaccaccctagtatgctagtttctctattaccaccacctaattatggaatttaagccatgcaagcaactatgtttggcagtttcaa 30028510  T
Q  135 tttctacaagatcatttttccattgatgcattaattagttctactattt 183  Q
    |||||||||||| || |||||||||||||| |||||| | |||||||||    
T  30028509 tttctacaagattatgtttccattgatgcaataattattgctactattt 30028461  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 255
Target Start/End: Complemental strand, 30056568 - 30056398
Alignment:
Q  89 attattgactttaagctaagcaagccaatatgcttaacaattccaatttctacaagatcatttttccattgatgcattaattagttctactatttcatca 188  Q
    ||||| |||||||||  | |||||||| |||| ||  || || ||||||||||||||| || |||||||||||||| |||||| | ||||| ||| |       
T  30056568 attatggactttaagtcatgcaagccactatgtttggcattttcaatttctacaagattatgtttccattgatgcaataattaatgctactgtttaaatt 30056469  T
Q  189 gtaatttggcatctag----aattattataaataaggccaattcctcacgaattctcatcattgaaatata 255  Q
    ||| |||||| |||||    ||||| ||||||||||   |||| |||| | |||||||||||| |||||||    
T  30056468 gtactttggcctctaggattaattagtataaataagaaaaatttctcatgtattctcatcattaaaatata 30056398  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 37398660 - 37398599
Alignment:
Q  42 tccattgtcaccatcctaccatgctagtttctccattgcaccatcctattattgactttaag 103  Q
    ||||||| |||||||||| ||||||||||||||  |||||||| ||||||||| ||| ||||    
T  37398660 tccattgccaccatcctaacatgctagtttctctcttgcaccaccctattattaactctaag 37398599  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 37538336 - 37538294
Alignment:
Q  62 atgctagtttctccattgcaccatcctattattgactttaagc 104  Q
    ||||||||||||||||||||||| ||||  |||||||||||||    
T  37538336 atgctagtttctccattgcaccaccctaacattgactttaagc 37538294  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 40644493 - 40644451
Alignment:
Q  62 atgctagtttctccattgcaccatcctattattgactttaagc 104  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  40644493 atgctagtttctccattgcgccgccctattattgactttaagc 40644451  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 8724561 - 8724602
Alignment:
Q  58 taccatgctagtttctccattgcaccatcctattattgactt 99  Q
    ||||||||||||||||||||  ||||| ||||||||||||||    
T  8724561 taccatgctagtttctccatcccaccaccctattattgactt 8724602  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 24567610 - 24567545
Alignment:
Q  50 caccatcctaccatgctagtttctccattgcaccatcctattattgactttaagctaagcaagcca 115  Q
    ||||||| |||||||||||||| |||||| ||||| |||| |||||||||||||| || |||||||    
T  24567610 caccatcttaccatgctagtttttccattccaccaccctactattgactttaagccaaacaagcca 24567545  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 11682278 - 11682224
Alignment:
Q  129 ttccaatttctacaagatcatttttccattgatgcattaattagttctactattt 183  Q
    |||||||||| |||||||| | ||||||||||||||||||||| | |||||||||    
T  11682278 ttccaatttcaacaagatcgtgtttccattgatgcattaattattactactattt 11682224  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 11674805 - 11674752
Alignment:
Q  129 ttccaatttctacaagatcatttttccattgatgcattaattagttctactatt 182  Q
    |||||||||| |||||||||| ||||||||||||||| ||||| | ||||||||    
T  11674805 ttccaatttcaacaagatcatgtttccattgatgcatcaattattactactatt 11674752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 23619212 - 23619265
Alignment:
Q  50 caccatcctaccatgctagtttctccattgcaccatcctattattgactttaag 103  Q
    ||||| ||||||||||||||||  ||||| |||||||||| |||||||||||||    
T  23619212 caccaccctaccatgctagttttcccattccaccatcctactattgactttaag 23619265  T

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