View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_low_2 (Length: 563)

Name: NF16733_low_2
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_low_2
NF16733_low_2
[»] chr7 (5 HSPs)
chr7 (10-284)||(11504703-11504977)
chr7 (348-545)||(11504442-11504639)
chr7 (348-545)||(18939771-18939963)
chr7 (410-475)||(40964697-40964762)
chr7 (418-510)||(24760527-24760619)
[»] chr1 (2 HSPs)
chr1 (348-536)||(41326607-41326794)
chr1 (144-264)||(41326415-41326532)
[»] chr6 (7 HSPs)
chr6 (348-536)||(20909713-20909899)
chr6 (348-536)||(20924161-20924347)
chr6 (352-545)||(27445086-27445278)
chr6 (131-264)||(20909504-20909637)
chr6 (131-264)||(20923952-20924085)
chr6 (131-283)||(27445339-27445492)
chr6 (352-481)||(22081843-22081972)
[»] scaffold0003 (4 HSPs)
scaffold0003 (352-545)||(42080-42272)
scaffold0003 (352-545)||(35410-35601)
scaffold0003 (131-283)||(35196-35349)
scaffold0003 (131-283)||(41866-42019)
[»] chr8 (3 HSPs)
chr8 (348-510)||(42312827-42312989)
chr8 (131-264)||(42312618-42312751)
chr8 (390-537)||(43227163-43227307)
[»] chr2 (2 HSPs)
chr2 (445-541)||(7828246-7828342)
chr2 (10-81)||(7828179-7828250)
[»] chr4 (2 HSPs)
chr4 (352-481)||(37618000-37618129)
chr4 (390-428)||(30180300-30180338)
[»] chr3 (3 HSPs)
chr3 (463-545)||(52310802-52310883)
chr3 (463-545)||(53690014-53690095)
chr3 (418-510)||(52127962-52128054)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 11504977 - 11504703
Alignment:
Q  10 agtgagaagaatatgagaatacatggtggaatcagtgtcatctagctatccctcagttcttgatggctagtgcttgtttgcagttaaacgttggggtact 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  11504977 agtgagaagaatatgagaatacatggtgaaatcagtgtcatctagctatctctcggttcttgatggctagtgcttgtttgcagttaaacattggggtact 11504878  T
Q  110 gagagagggagggatctattataattgctgctttagagtgccatttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504877 gagagagggagggatctattataattgctgctttagagtgccatttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaa 11504778  T
Q  210 ttggtgaaattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacatattgcagatttaact 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11504777 ttggtgaaattcttattgtgcataggagtaaacataatgttttagaatcatcaaaaacagattgcagatttaact 11504703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 348 - 545
Target Start/End: Complemental strand, 11504639 - 11504442
Alignment:
Q  348 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504639 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 11504540  T
Q  448 tgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11504539 tggttttaaatttttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 11504442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 348 - 545
Target Start/End: Original strand, 18939771 - 18939963
Alignment:
Q  348 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 447  Q
    |||||||| |||| ||||||| | ||||||||||||| | |||||||||||| |  |||||||||||||||||||||||||||| ||||||||||| |||    
T  18939771 caataaacacagttgcatcaattaagacgtcttcgat-ataaagatatcttccttccaaacaacacttgattctaaaactcttgattcatcatatgttag 18939869  T
Q  448 tgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    || ||||    |||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18939870 tgttttt----ttttttaacatagaacacaaacctctaagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagattttca 18939963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 40964762 - 40964697
Alignment:
Q  410 acacttgattctaaaactcttgcttcatcatatggtagtgattttaaaattttttaacatagaaca 475  Q
    ||||||||||||||||||| ||||||||| ||||||||   ||||||| | |||||||||| ||||    
T  40964762 acacttgattctaaaactcatgcttcatcctatggtagatgttttaaattcttttaacataaaaca 40964697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 510
Target Start/End: Complemental strand, 24760619 - 24760527
Alignment:
Q  418 ttctaaaactcttgcttcatcatatggtagtgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaatt 510  Q
    ||||||||| | ||||||||| |||||||||| ||||    || |||||||||||||||||||| |||  |  | |||||| |||||||||||    
T  24760619 ttctaaaacccctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaatt 24760527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 348 - 536
Target Start/End: Original strand, 41326607 - 41326794
Alignment:
Q  348 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 447  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||| |||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||    
T  41326607 caataaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaaaacttgattctaaaactcttgcttcatcatatggcag 41326706  T
Q  448 tgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctat 536  Q
    || ||| |   |||| ||||||||||||||||||| || ||| ||||||||||||||||||||  | || ||| |||||||||||||||    
T  41326707 tggtttaatttttttctaacatagaacaccaaactataagaagattcaaaaagcaagtgaatt-caatgttcttatagcctctttctat 41326794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 144 - 264
Target Start/End: Original strand, 41326415 - 41326532
Alignment:
Q  144 agagtgccatttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgcataggagtaaaca 243  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||| |   |    
T  41326415 agagttccatttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgcataggagca---a 41326511  T
Q  244 taatgttttagaatcatcaaa 264  Q
    | ||||||| |||||||||||    
T  41326512 tgatgttttggaatcatcaaa 41326532  T

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Target: chr6 (Bit Score: 93; Significance: 5e-45; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 348 - 536
Target Start/End: Original strand, 20909713 - 20909899
Alignment:
Q  348 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 447  Q
    |||||||| |||||||||||||| |||||||||| |||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  20909713 caataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcag 20909812  T
Q  448 tgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctat 536  Q
    ||  |||||  |||| |||| |||||||||||||| || ||| ||||||||||||||||||||  | || |||| ||||||||||||||    
T  20909813 tg-gtttaattttttctaacttagaacaccaaactataagaagattcaaaaagcaagtgaatt-caatgttctcgtagcctctttctat 20909899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 348 - 536
Target Start/End: Original strand, 20924161 - 20924347
Alignment:
Q  348 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 447  Q
    |||||||| |||||||||||||| |||||||||| |||||| ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  20924161 caataaacacagtggcatcaagtaagacgtcttctattacagagagatcttcctgtcgaacaacacttgattctaaaactcttgcttcatcatatggcag 20924260  T
Q  448 tgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctat 536  Q
    ||  |||||  |||| |||| |||||||||||||| || ||| ||||||||||||||||||||  | || |||| ||||||||||||||    
T  20924261 tg-gtttaattttttctaacttagaacaccaaactataagaagattcaaaaagcaagtgaatt-caatgttctcgtagcctctttctat 20924347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 352 - 545
Target Start/End: Complemental strand, 27445278 - 27445086
Alignment:
Q  352 aaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtgat 451  Q
    |||| ||| |||| ||||| |||| |||||||  | ||| |||||||| |||||| ||||| |||||||||||||| |||||||||| |||||||||| |    
T  27445278 aaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggt 27445179  T
Q  452 tttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    |||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| |  | || ||||||||| ||||| ||||||||||||    
T  27445178 tttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaagtgaact-caatgttctcatagcatctttgtatagattttca 27445086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 20909504 - 20909637
Alignment:
Q  131 taattgctgctttagagtgccatttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgc 230  Q
    ||||| |||||| ||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||    
T  20909504 taattcctgcttcagagttccatttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgc 20909603  T
Q  231 ataggagtaaacataatgttttagaatcatcaaa 264  Q
    ||||||| ||| || ||||||| |||||||||||    
T  20909604 ataggagcaaatatgatgttttggaatcatcaaa 20909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 20923952 - 20924085
Alignment:
Q  131 taattgctgctttagagtgccatttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgc 230  Q
    ||||| |||||| ||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||    
T  20923952 taattcctgcttcagagttccatttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgc 20924051  T
Q  231 ataggagtaaacataatgttttagaatcatcaaa 264  Q
    ||||||| ||| || ||||||| |||||||||||    
T  20924052 ataggagcaaatatgatgttttggaatcatcaaa 20924085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 283
Target Start/End: Complemental strand, 27445492 - 27445339
Alignment:
Q  131 taattgctgctttagagtgccat-ttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 229  Q
    |||||||||||| ||| |||| | || | ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |   |||||||||||||    
T  27445492 taattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtg 27445393  T
Q  230 cataggagtaaacataatgttttagaatcatcaaaaacatattgcagatttaac 283  Q
    |||||||| |||||| || |||| ||||| ||||| | | ||||||||||||||    
T  27445392 cataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaac 27445339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 352 - 481
Target Start/End: Complemental strand, 22081972 - 22081843
Alignment:
Q  352 aaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtgat 451  Q
    |||| |||||||||||||| || || ||| || |||||||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||  |||| |    
T  22081972 aaacacagtggcatcaagtaagtcgactttgactacaaagataacttcatgtcaaacaacgcttgattctaaaactcctacttcatcctatgtaagtggt 22081873  T
Q  452 tttaaaattttttaacatagaacaccaaac 481  Q
    ||| |  ||||| |||||||||||||||||    
T  22081872 tttgatttttttaaacatagaacaccaaac 22081843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 352 - 545
Target Start/End: Original strand, 42080 - 42272
Alignment:
Q  352 aaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtgat 451  Q
    |||| ||| |||| ||||| |||| |||||||  | ||| |||||||| |||||| ||||| |||||||||||||| |||||||||| |||||||||| |    
T  42080 aaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggt 42179  T
Q  452 tttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    |||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| |  | || ||||||||| ||||| ||||||||||||    
T  42180 tttaattttttttaacatagaacaccaaactctaagaagattcaaaaagcaagtgaact-caatgttctcatagcatctttgtatagattttca 42272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 352 - 545
Target Start/End: Original strand, 35410 - 35601
Alignment:
Q  352 aaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtgat 451  Q
    |||| ||| |||| ||||| |||| |||||||  | ||| |||||||| |||||| ||||| |||||||||||||| |||||||||| |||||||||| |    
T  35410 aaacacaggggcagcaagttagacatcttcgacaataaatatatcttcctgtcaatcaacatttgattctaaaactattgcttcatcctatggtagtggt 35509  T
Q  452 tttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    ||| || |||||||||||||||||||||||||   ||| |||||||||||||||||| |  | || ||||||||| ||||| ||||||||||||    
T  35510 ttt-aatttttttaacatagaacaccaaactcatagaagattcaaaaagcaagtgaact-caatgttctcatagcatctttgtatagattttca 35601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 131 - 283
Target Start/End: Original strand, 35196 - 35349
Alignment:
Q  131 taattgctgctttagagtgccat-ttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 229  Q
    |||||||||||| |||||||| | || | ||||||||| | || |||||||||||||||||||||||||| ||||||||||| |   |||||||||||||    
T  35196 taattgctgcttcagagtgccctattactttttaaatgcagaaatacatgagttagttgataattatctagcaaattcaattagcagaattcttattgtg 35295  T
Q  230 cataggagtaaacataatgttttagaatcatcaaaaacatattgcagatttaac 283  Q
    |||||||| |||||| || |||| ||||| ||||| | | ||||||||||||||    
T  35296 cataggagcaaacatgatattttggaatcctcaaacagaaattgcagatttaac 35349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 283
Target Start/End: Original strand, 41866 - 42019
Alignment:
Q  131 taattgctgctttagagtgccat-ttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtg 229  Q
    |||||||||||| ||| |||| | || | ||||||||| | ||||||||||| ||||||||||||||||| ||||||||||| |   |||||||||||||    
T  41866 taattgctgcttcagaatgccctattactttttaaatgcagaactacatgagctagttgataattatctagcaaattcaattagcagaattcttattgtg 41965  T
Q  230 cataggagtaaacataatgttttagaatcatcaaaaacatattgcagatttaac 283  Q
    |||||||| |||||| || |||| ||||| ||||| | | ||||||||||||||    
T  41966 cataggagcaaacatgatattttggaatcctcaaacaaaaattgcagatttaac 42019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 348 - 510
Target Start/End: Original strand, 42312827 - 42312989
Alignment:
Q  348 caataaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtag 447  Q
    |||| ||| |||||||||||||| ||||||||||||||||| ||| |||||| |||| |||||||||||||||||| |||||||||||||| ||||| ||    
T  42312827 caatgaacacagtggcatcaagtaagacgtcttcgattacagagagatcttcctgtcgaacaacacttgattctaatactcttgcttcatcgtatggcag 42312926  T
Q  448 tgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaatt 510  Q
    || ||| |   |||| ||||||||||||||||||| || ||| || |||||||||||||||||    
T  42312927 tggtttaatttttttctaacatagaacaccaaactataagaagatacaaaaagcaagtgaatt 42312989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 131 - 264
Target Start/End: Original strand, 42312618 - 42312751
Alignment:
Q  131 taattgctgctttagagtgccatttcccttttaaatgaaaaactacatgagttagttgataattatctaccaaattcaattggtgaaattcttattgtgc 230  Q
    ||||| |||||| | ||| ||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||    
T  42312618 taatttctgcttcatagttccatttctcttttaaatgcaaaactacatgagttaattgataattatctagcaaattcaattagggaaattcttattgtgc 42312717  T
Q  231 ataggagtaaacataatgttttagaatcatcaaa 264  Q
    ||||||| |||| | ||||||| |||||||||||    
T  42312718 ataggagcaaacgtgatgttttggaatcatcaaa 42312751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 390 - 537
Target Start/End: Complemental strand, 43227307 - 43227163
Alignment:
Q  390 agatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtgattttaaaattttttaacatagaacaccaaactctaggaa 489  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| | ||| || ||||||||||||||||||||||||| | | |    
T  43227307 agatatcttcctgtcaaagaacacttgattctaaaactcttgcttcatcctatggtagt-agttttaatttttttaacatagaacaccaaactcaatg-a 43227210  T
Q  490 aattcaaaaagcaagtgaattgtattggtctcatagcctctttctata 537  Q
     ||||||||| ||||||||||  | || ||||||||| ||||||||||    
T  43227209 gattcaaaaatcaagtgaatt-caatgttctcatagcatctttctata 43227163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 445 - 541
Target Start/End: Original strand, 7828246 - 7828342
Alignment:
Q  445 tagtgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagatt 541  Q
    ||||| ||||||  |||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7828246 tagtggttttaattttttttaacatagaacacaaacctctaagaaaattcaaaaagcaagtgaattgttttggtctcatagcctctttctatagatt 7828342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 7828179 - 7828250
Alignment:
Q  10 agtgagaagaatatgagaatacatggtggaatcagtgtcatctagctatccctcagttcttgatggctagtg 81  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7828179 agtgagaagaatatgagaatacatggtggaatcagagtcatctagctatccctcagttcttgatggctagtg 7828250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 352 - 481
Target Start/End: Original strand, 37618000 - 37618129
Alignment:
Q  352 aaacgcagtggcatcaagtgagacgtcttcgattacaaagatatcttcatgtcaaacaacacttgattctaaaactcttgcttcatcatatggtagtgat 451  Q
    |||| |||||||||||||| || || ||| || |||||||||| |||||||||||||||| |||||||||||||||| | ||||||| ||||  |||| |    
T  37618000 aaacacagtggcatcaagtaagtcgactttgactacaaagataacttcatgtcaaacaacgcttgattctaaaactccttcttcatcctatgtaagtggt 37618099  T
Q  452 tttaaaattttttaacatagaacaccaaac 481  Q
    ||| |  ||||| |||||||||||||||||    
T  37618100 tttgatttttttaaacatagaacaccaaac 37618129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 428
Target Start/End: Complemental strand, 30180338 - 30180300
Alignment:
Q  390 agatatcttcatgtcaaacaacacttgattctaaaactc 428  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  30180338 agatatcttcttgtcaaacaacaattgattctaaaactc 30180300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 463 - 545
Target Start/End: Original strand, 52310802 - 52310883
Alignment:
Q  463 ttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    ||||||||||||||||||||||| ||| |||||||||| ||||||||| || || ||||||||||||||||||||||||||||    
T  52310802 ttaacatagaacaccaaactctaagaagattcaaaaagaaagtgaatt-taatgttctcatagcctctttctatagattttca 52310883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 463 - 545
Target Start/End: Complemental strand, 53690095 - 53690014
Alignment:
Q  463 ttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaattgtattggtctcatagcctctttctatagattttca 545  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||  | || ||||||||| ||||||||||||||||||    
T  53690095 ttaacatagaacaccaaactctaagaagattcaaaaagaaagtgaatt-caatgttctcatagcatctttctatagattttca 53690014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 510
Target Start/End: Complemental strand, 52128054 - 52127962
Alignment:
Q  418 ttctaaaactcttgcttcatcatatggtagtgattttaaaattttttaacatagaacaccaaactctaggaaaattcaaaaagcaagtgaatt 510  Q
    ||||||||| | ||||||||| |||||||||| ||||    || |||||||||||||||||||| |||  |  | |||||| |||||||||||    
T  52128054 ttctaaaacccctgcttcatcctatggtagtggttttggttttgtttaacatagaacaccaaaccctaaaaggaatcaaaatgcaagtgaatt 52127962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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