View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16733_low_20 (Length: 283)
Name: NF16733_low_20
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16733_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 271
Target Start/End: Complemental strand, 4230082 - 4229859
Alignment:
| Q |
49 |
ggagaataaaaatggaagttttataaaatttattgcaataattaattaaaatgnnnnnnnnnn-ctatagcaaacctaaaatatgataggttgcaaaaat |
147 |
Q |
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| T |
4230082 |
ggagaataaaaatggaagttttataaaatttattgcaataattaattaaaatgtttttttttttctatagcaaacctaaaatatgataggttgcaaaaat |
4229983 |
T |
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| Q |
148 |
aaagcataaaaccaatatacccagaaatgnnnnnnnnnnnnnnnnnnnnnnnnagtccttaaaaagaacaccnnnnnnncacaaacaataactagaattg |
247 |
Q |
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| T |
4229982 |
aaagcataaaaccaatatacccagaaatgtttttttttttttcctttctttttagtccttaaaaagaacaccaaaaaaacacaaacaataactagaattg |
4229883 |
T |
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| Q |
248 |
aagggattgatgtatatgttatag |
271 |
Q |
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|||||||||||||||||||||||| |
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| T |
4229882 |
aagggattgatgtatatgttatag |
4229859 |
T |
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