View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16733_low_21 (Length: 265)

Name: NF16733_low_21
Description: NF16733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16733_low_21
NF16733_low_21
[»] chr2 (10 HSPs)
chr2 (13-250)||(44259644-44259878)
chr2 (20-63)||(5868985-5869028)
chr2 (20-63)||(26290470-26290513)
chr2 (200-241)||(44262800-44262841)
chr2 (20-63)||(18242150-18242193)
chr2 (20-63)||(30707088-30707131)
chr2 (93-135)||(5868912-5868954)
chr2 (94-136)||(18242076-18242118)
chr2 (27-63)||(2104143-2104179)
chr2 (153-181)||(44262951-44262979)
[»] chr8 (6 HSPs)
chr8 (20-143)||(13751365-13751489)
chr8 (20-63)||(9946766-9946809)
chr8 (20-63)||(44004322-44004365)
chr8 (93-136)||(45231682-45231725)
chr8 (94-144)||(9946847-9946897)
chr8 (98-142)||(44004245-44004289)
[»] chr7 (9 HSPs)
chr7 (91-136)||(39608263-39608308)
chr7 (20-63)||(33540099-33540142)
chr7 (20-61)||(44767328-44767369)
chr7 (96-136)||(19468256-19468296)
chr7 (20-63)||(38190271-38190314)
chr7 (20-63)||(40230939-40230982)
chr7 (94-136)||(27224212-27224254)
chr7 (96-136)||(33540026-33540066)
chr7 (20-60)||(39608190-39608230)
[»] chr5 (2 HSPs)
chr5 (20-63)||(11245436-11245479)
chr5 (20-63)||(27246269-27246312)
[»] chr4 (8 HSPs)
chr4 (20-63)||(6132003-6132046)
chr4 (93-136)||(16061383-16061426)
chr4 (20-63)||(18886219-18886262)
chr4 (207-241)||(56165333-56165367)
chr4 (94-133)||(6086984-6087023)
chr4 (20-63)||(6166427-6166470)
chr4 (20-63)||(32727978-32728021)
chr4 (93-137)||(36441011-36441055)
[»] chr1 (6 HSPs)
chr1 (20-63)||(24892014-24892057)
chr1 (20-63)||(26687697-26687740)
chr1 (20-63)||(23688386-23688429)
chr1 (20-63)||(50509838-50509881)
chr1 (20-62)||(9672544-9672586)
chr1 (26-63)||(7380378-7380415)
[»] chr6 (5 HSPs)
chr6 (20-60)||(1522656-1522696)
chr6 (20-63)||(1112499-1112542)
chr6 (20-63)||(7201157-7201200)
chr6 (93-136)||(10670089-10670132)
chr6 (95-135)||(26497784-26497824)
[»] chr3 (3 HSPs)
chr3 (20-62)||(54561153-54561195)
chr3 (95-132)||(54561226-54561263)
chr3 (99-143)||(4207268-4207312)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 44259878 - 44259644
Alignment:
Q  13 ataatacttatacgagtgtaattttcaatttaactagaagattaatcttttnnnnnnnttgtgcgnnnnnnnnaccatgagcctatttttactatgagag 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||         ||||||| |||||||||||| ||||||    
T  44259878 ataataattatacgagtgtaattttcaatttaactagaagattaatctttttaaaaaattgtgcattctttttaccatgaacctatttttactctgagag 44259779  T
Q  113 ccgagcctccggttttatagggacaaccctgaccaccaccactaccactactccaataattctgccttgactattacaacttagaattccttcattacta 212  Q
    ||||||||||||||||||||||||  |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44259778 ccgagcctccggttttatagggacggccctgaccaccac---taccactactccaataattctgccttgactattacaacttagaattccttcattacga 44259682  T
Q  213 tattgaacccaaaattctgctgcaagctcacaccaaac 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44259681 tattgaacccaaaattctgctgcaagctcacaccaaac 44259644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 5869028 - 5868985
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  5869028 ttatacgagtgttattttcaatttaaatagaagattaatctttt 5868985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 26290470 - 26290513
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  26290470 ttatacgagtgttattttcaatttaaatagaagattaatctttt 26290513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 44262841 - 44262800
Alignment:
Q  200 tccttcattactatattgaacccaaaattctgctgcaagctc 241  Q
    |||||| |||||||||||||||||||| ||||||||||||||    
T  44262841 tccttccttactatattgaacccaaaactctgctgcaagctc 44262800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 18242193 - 18242150
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| |||||| |||||| |||||||||||||||||    
T  18242193 ttatacgagtgttattttcgatttaaatagaagattaatctttt 18242150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 30707088 - 30707131
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||    
T  30707088 ttatacgagtgttattttcaatttaaatagaaaattaatctttt 30707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 5868954 - 5868912
Alignment:
Q  93 gcctatttttactatgagagccgagcctccggttttataggga 135  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  5868954 gcctatttttactacgagagccgagcctctagttttataggga 5868912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 18242118 - 18242076
Alignment:
Q  94 cctatttttactatgagagccgagcctccggttttatagggac 136  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||    
T  18242118 cctatttttactacgagagccaagcctccagttttatagggac 18242076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 2104143 - 2104179
Alignment:
Q  27 agtgtaattttcaatttaactagaagattaatctttt 63  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  2104143 agtgttattttcaatttaaatagaagattaatctttt 2104179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 181
Target Start/End: Complemental strand, 44262979 - 44262951
Alignment:
Q  153 actaccactactccaataattctgccttg 181  Q
    |||||||||||||||||||||||||||||    
T  44262979 actaccactactccaataattctgccttg 44262951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 13751489 - 13751365
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatcttttnnnnnnnttgtgcgnnnnnnnn-accatgagcctatttttactatgagagccgagc 118  Q
    |||||||||||| ||||||||||||| |||||||||||||||||       |||||||         || | |||||||||||||||||||||| | |||    
T  13751489 ttatacgagtgttattttcaatttaaatagaagattaatcttttcaaaaaattgtgcgtttttttttactaggagcctatttttactatgagagtcaagc 13751390  T
Q  119 ctccggttttatagggacaaccctg 143  Q
    |||| ||||||||||||| ||||||    
T  13751389 ctccagttttatagggacgaccctg 13751365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 9946766 - 9946809
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  9946766 ttatacgagtgttattttcaatttaaatagaagattaatctttt 9946809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 44004365 - 44004322
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| ||||||||| |||||||    
T  44004365 ttatacgagtgttattttcaatttaaatagaagatttatctttt 44004322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 45231682 - 45231725
Alignment:
Q  93 gcctatttttactatgagagccgagcctccggttttatagggac 136  Q
    ||||||||||| || ||||||||||||||| |||||||||||||    
T  45231682 gcctatttttattacgagagccgagcctccagttttatagggac 45231725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 9946847 - 9946897
Alignment:
Q  94 cctatttttactatgagagccgagcctccggttttatagggacaaccctga 144  Q
    ||||||||||||| ||||||||||||||  ||||| ||||||| |||||||    
T  9946847 cctatttttactacgagagccgagcctctagttttgtagggacgaccctga 9946897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 44004289 - 44004245
Alignment:
Q  98 tttttactatgagagccgagcctccggttttatagggacaaccct 142  Q
    ||||||||||||||||||||||||  |||||||| |||| |||||    
T  44004289 tttttactatgagagccgagcctcgagttttataaggacgaccct 44004245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 39608263 - 39608308
Alignment:
Q  91 gagcctatttttactatgagagccgagcctccggttttatagggac 136  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  39608263 gagcctatttttactacgagagccgagcctccagttttatagggac 39608308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 33540142 - 33540099
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  33540142 ttatacgagtgttattttcaatttaaatagaagattaatctttt 33540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 44767369 - 44767328
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctt 61  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  44767369 ttatacgagtgttattttcaatttaaatagaagattaatctt 44767328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 19468296 - 19468256
Alignment:
Q  96 tatttttactatgagagccgagcctccggttttatagggac 136  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  19468296 tatttttactatgagagtcgagcctccgattttatagggac 19468256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 38190314 - 38190271
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||    
T  38190314 ttatacgagtgttattttcaatttaaatagaatattaatctttt 38190271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 40230939 - 40230982
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||    
T  40230939 ttatacgagtgttattctcaatttaaatagaagattaatctttt 40230982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 27224254 - 27224212
Alignment:
Q  94 cctatttttactatgagagccgagcctccggttttatagggac 136  Q
    |||||||||||||||||||| |||| ||| |||||||||||||    
T  27224254 cctatttttactatgagagctgagcttccagttttatagggac 27224212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 33540066 - 33540026
Alignment:
Q  96 tatttttactatgagagccgagcctccggttttatagggac 136  Q
    |||||||||||||||||||||||||||  ||||||| ||||    
T  33540066 tatttttactatgagagccgagcctccaattttatacggac 33540026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 39608190 - 39608230
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatct 60  Q
    |||||| ||||| ||||||||||||| ||||||||||||||    
T  39608190 ttataccagtgttattttcaatttaaatagaagattaatct 39608230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 11245436 - 11245479
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  11245436 ttatacgagtgttattttcaatttaaatagaagattaatctttt 11245479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 27246269 - 27246312
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||    
T  27246269 ttatacgagtgttattttcaatttaaatagaaaattaatctttt 27246312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 6132003 - 6132046
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  6132003 ttatacgagtgttattttcaatttaaatagaagattaatctttt 6132046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 16061426 - 16061383
Alignment:
Q  93 gcctatttttactatgagagccgagcctccggttttatagggac 136  Q
    |||||||||||||| ||||||||||||||| |||||||||||||    
T  16061426 gcctatttttactacgagagccgagcctccagttttatagggac 16061383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 18886219 - 18886262
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  18886219 ttatacgagtgttattttcaatttaaatagaagattaatctttt 18886262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 56165367 - 56165333
Alignment:
Q  207 ttactatattgaacccaaaattctgctgcaagctc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  56165367 ttactatattgaacccaaaattctgctgcaagctc 56165333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 6087023 - 6086984
Alignment:
Q  94 cctatttttactatgagagccgagcctccggttttatagg 133  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  6087023 cctatttttactacgagagccgagcctccagttttatagg 6086984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 6166427 - 6166470
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||    
T  6166427 ttatacgagtgttattttaaatttaaatagaagattaatctttt 6166470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 32728021 - 32727978
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  32728021 ttataggagtgttattttcaatttaaatagaagattaatctttt 32727978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 36441055 - 36441011
Alignment:
Q  93 gcctatttttactatgagagccgagcctccggttttatagggaca 137  Q
    |||||||||||||| ||||||||||||||| |||| ||| |||||    
T  36441055 gcctatttttactaagagagccgagcctccagtttcataaggaca 36441011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 24892057 - 24892014
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  24892057 ttatacgagtgttattttcaatttaaatagaagattaatctttt 24892014  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 26687740 - 26687697
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||||||||||    
T  26687740 ttatacgagtgttattttcaatttaaatagaagattaatctttt 26687697  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 23688429 - 23688386
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| |||||||||| ||||||    
T  23688429 ttatacgagtgttattttcaatttaaatagaagattattctttt 23688386  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 50509838 - 50509881
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||    
T  50509838 ttatacgagtgttattttcaatttaaatagaaaattaatctttt 50509881  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 9672544 - 9672586
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatcttt 62  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||    
T  9672544 ttatacgagtgttattttaaatttaaatagaagattaatcttt 9672586  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 7380415 - 7380378
Alignment:
Q  26 gagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  7380415 gagtgttattttcaatttaaatagaagattaatctttt 7380378  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 1522656 - 1522696
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatct 60  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  1522656 ttatacgagtgttattttcaatttaaatagaagattaatct 1522696  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 1112542 - 1112499
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||    
T  1112542 ttatacgaatgttattttcaatttaaatagaagattaatctttt 1112499  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 7201157 - 7201200
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatctttt 63  Q
    |||||| ||||| ||||||||||||| |||||||||||||||||    
T  7201157 ttatacaagtgttattttcaatttaaatagaagattaatctttt 7201200  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 10670089 - 10670132
Alignment:
Q  93 gcctatttttactatgagagccgagcctccggttttatagggac 136  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||    
T  10670089 gcctatttttactatgagagtcgagcctccagtttcatagggac 10670132  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 26497824 - 26497784
Alignment:
Q  95 ctatttttactatgagagccgagcctccggttttataggga 135  Q
    |||||||||||||||||||||||||||  |||| |||||||    
T  26497824 ctatttttactatgagagccgagcctctagtttcataggga 26497784  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 54561153 - 54561195
Alignment:
Q  20 ttatacgagtgtaattttcaatttaactagaagattaatcttt 62  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  54561153 ttatatgagtgttattttcaatttaaatagaagattaatcttt 54561195  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 132
Target Start/End: Original strand, 54561226 - 54561263
Alignment:
Q  95 ctatttttactatgagagccgagcctccggttttatag 132  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  54561226 ctatttttacaatgagagccgagcctccagttttatag 54561263  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 4207312 - 4207268
Alignment:
Q  99 ttttactatgagagccgagcctccggttttatagggacaaccctg 143  Q
    ||||| |||||||| |||||||||  |||||||||||||||||||    
T  4207312 ttttattatgagagtcgagcctccaattttatagggacaaccctg 4207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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